Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07830 707 / 0 ATGUS2 glucuronidase 2 (.1) AT5G61250 682 / 0 ATGUS1 glucuronidase 1 (.1.2) AT5G34940 494 / 4e-171 ATGUS3 glucuronidase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021652 [exp] 1003 / 0 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10015737 [exp] 821 / 0 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 802 / 0 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 521 / 0 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10008823 [exp] 515 / 3e-179 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10004664 [exp] 513 / 6e-179 AT5G07830 519 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 512 / 1e-178 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10038109 [exp] 491 / 5e-170 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10037109 [exp] 484 / 1e-167 AT5G61250 503 / 7e-175 glucuronidase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049100 [exp] 734 / 0 AT5G07830 731 / 0.0 glucuronidase 2 (.1) Potri.010G160800 [exp] 568 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.018G121500 [exp] 503 / 2e-174 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 498 / 2e-172 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 496 / 1e-171 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034707 pacid=23162722 polypeptide=Lus10034707 locus=Lus10034707.g ID=Lus10034707.BGIv1.0 annot-version=v1.0 ATGACTGCCACAGTTGTGGTCAATGGGGCTACCAAAGTTGCTGAGACTGATGACAACTACGTGTGTGCTACATTAGATTGGTGGCCTCATGATAAGTGTG ATTACAACCATTGTCCATGGGGATATACGTCTGCAGTGAATCTGGATGTGTCTCATCCTGTTCTTGGCAAAGCTATCCAAGCTTTCAGCCCACTGAGAAT AAGGATTGGAGGGTCTTTGCAAGACCAAGTTCTCTATGACGTGGGAAATCTGGGTTCCAACTGCCATTCTTTTTTCAAGATGAAATGGGGACTTTTCGGG TTCTCGAAGGGATGTTTGCACATGGATCGATGGGATTCGCTCAACAACTTATTCAGCAGAACTGGAGCTATGGTGACATTCGGGTTGAATGCTCTCCGTG GTAGGCACAAGACGTGGGGTAAGCATTGGGGAGGATCTTGGAACTCAACTAATACTTATGATCTCATCAGCTATACCATCTCAAAGGGACACAAGATTGA CTCTTGGGAATATGGTAACGAATTGAGTGGTACTGGTATAGGTGCAAGCGTTAGTGTTGATACCTATGCAAAAGATGTGATCAAACTCAGAGAAATTGTT GATACATTATACAAGAACTCGAAGAGGAAACCTTCGGTTATAGCACCGGGAGGTTTCTTTGAGAAAGATTGGTATGCTAAGCTTCTCAAGATTACAGGTC CCGGAACAATCAACGTTGTCACTCATCATATATACAACTTGGGTGCAGGTGTTGATCCACACCTCATCCAGCACATTATGGATCCAAACTATTTGAGCAA GGTGTCAAGGACATTCGGTAATCTTTCACAAACCATAAAACAGAACGGACCGTGGGCTTCAGCTTGGGTTGGCGAGTCAGGTGGCGCGTACAACAGTGGC GGTTTTCATATATCTGATACGTTTGTGAACAGCTTCTGGTACTTGGATCAGCTGGGCTTGGCAGCTACATACAATACAAAAGTCTACTGCAGGCAGACTC TAGTAGGCGGACACTATAGTTTACTCAACATTACAACATTCGTTCCGAATCCTGATTATTACAGTGCCCTTCTATGGCATAGATTGATGGGGAAAACTGT TCTAGGCGTCACCAGCACTGCTTCGCCTTATCTACGGTACTATGCGCATTGCTCCCGAGGCAGACAAGGCATCACAGTGCTGCTAATCAACCTTAGCAAC AGCACACGATTCATAGTCAACATAAGAAGCAGCTCCAGCTTGGCGCTGAACCTGCAAGCAAGGGAACCGGGAATCAAAAGTTCCTTCATCGACAGCCTCA AGAGGTCGGTCTCGTGGATAGGAAGCAAAGCGACAGAAGGGTCATTGTTCAGAGAAGAGTACCATCTGAGTCCGAAAGATGGGAACCTTAGAAGCAAGAC AATGCTTCTAAATGGAAACCCAATACAGCTTACGGAGAAGGGAGACATCCCAAAGCTTGAACCAGTGCGTTACAGATTGAGCTCTCCGCTATATATAAGT TCGTCCTCAATCTCATTCATAGTGCTGCCTAATTTTGGTGCTCCTGCTTGTGCCTAA
AA sequence Show only first row Show all	>Lus10034707 pacid=23162722 polypeptide=Lus10034707 locus=Lus10034707.g ID=Lus10034707.BGIv1.0 annot-version=v1.0 MTATVVVNGATKVAETDDNYVCATLDWWPHDKCDYNHCPWGYTSAVNLDVSHPVLGKAIQAFSPLRIRIGGSLQDQVLYDVGNLGSNCHSFFKMKWGLFG FSKGCLHMDRWDSLNNLFSRTGAMVTFGLNALRGRHKTWGKHWGGSWNSTNTYDLISYTISKGHKIDSWEYGNELSGTGIGASVSVDTYAKDVIKLREIV DTLYKNSKRKPSVIAPGGFFEKDWYAKLLKITGPGTINVVTHHIYNLGAGVDPHLIQHIMDPNYLSKVSRTFGNLSQTIKQNGPWASAWVGESGGAYNSG GFHISDTFVNSFWYLDQLGLAATYNTKVYCRQTLVGGHYSLLNITTFVPNPDYYSALLWHRLMGKTVLGVTSTASPYLRYYAHCSRGRQGITVLLINLSN STRFIVNIRSSSSLALNLQAREPGIKSSFIDSLKRSVSWIGSKATEGSLFREEYHLSPKDGNLRSKTMLLNGNPIQLTEKGDIPKLEPVRYRLSSPLYIS SSSISFIVLPNFGAPACA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	0	1
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	2.4	0.7933
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024179 [exp]	2.8	0.7496
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	4.2	0.7718
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	9.6	0.7740
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10023420 [exp]	12.2	0.6877
AT4G20300			Protein of unknown function (D...		Lus10036240 [exp]	13.2	0.7225
AT5G07240		IQD24	IQ-domain 24 (.1)		Lus10005760 [exp]	13.3	0.6891
AT1G15410			aspartate-glutamate racemase f...		Lus10030057 [exp]	14.3	0.6938
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10014661 [exp]	15.5	0.7044
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021389 [exp]	16.4	0.7311

Compare expression of checked genes

Lus10034707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.