Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021651 [exp] 1131 / 0 ND / Lus10034709 [exp] 87 / 5e-17 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066900 [exp] 74 / 8e-13 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034708 pacid=23162786 polypeptide=Lus10034708 locus=Lus10034708.g ID=Lus10034708.BGIv1.0 annot-version=v1.0 ATGGAGAGTGGCGGGGAAGCGGTGGATGATCATGGCCCTGGTTGGGTGCCAGTGAAAAAGAAACATAGAAGTGGCTCAAAGTTTTCTGTGCGGAGCTGGG CTGGTGGATTTTCAGGAAATAATGGCTCCAGTCATCAGCTTCCTATTGCCTCAGTGAGTGCGAAATTTGCAAAGTTTGCTGGGAAGCACAAATCCCATAT TTCAAAAGGAGATTCAAAAAATTCTAAGTCGGTGCTGGATGAAGGTGACAACGGTAAAGCTACTACGAACAAATCAGCTAGCTTATCTAAAAGCAAAAAT AGTTCAAGCCCTCCCAAGCCCCCCGGATCAAATGTCAGTAGTAATATTCCTGTTTCTGATGGTAATCAGGAACTCCCACAAAAGGATGAGCCTGAAAGGG TTCCCAAAATGAAGTGGGGTGATTTCGATGATGATGATGTCTCATCACTGTTTCCAGGAACTATGCATGAGGGAAGTGTAAGGTCTTACGGAAGCAAGAA TATCAGTTTGGTAGATTTTGACAATGAAACTCTAAGTCATTTAACTTCATCTAGTTTTTCTTGTTCGGATCTCCGAGAAACTAAGTCGGTGGTAACCGCT GTAACAGCTGTAACAGTTGATAGTTATCCTTCATTGGCTAGTAAGGAAGAGAAATTTGAGGATAACAGTGATGAATCAAGCACGGTATCTGTGCCAGAGG TTGATGCACCAATCATGGATACCCATCATATTGCTTCTGATAATGTCTCAGATTCTGGCAAAACTTGTGAACTAAGACATGATTGTTTGAAAATTGAAGT GCCACCTTGTGAAGAAACTGACATGGGAGTCCAGGTGCCTAAATTGGTGCATGATTCAGGAATCCAGGGAGTGCCAGAAATTGGTGAAGTGCCAGCTCTG AATTCAAGTTTTTCCTTTGGTACCAGAAATAAATGTGAAATCTCTGTAGATGGTGGTACACCACCATTCAACCCAGACCCTCGTGAAGTAAATATGTCGG AGCTCTCTACATCACCAGTCGAGAAACTGAGTGATTCTGAAATGCCTTTAGAAGGCAGTACACCACTTACTTCAGAGTCTCCTGAAGATTATGTGTCAGA TACCTCTTCGCCGCCTGTTGAAAAACTGAGTGTGGTGGTTACATGCCAGTCTCCTTTTGTCTCTGAAGGAAATAAACAAGCAGTTTCTAATTCATCAGTT ACAACAGAAAAAACTGGCATGGTGGCTCCACATCAGCCGCCCTTGGAGGTTTCTGGAGCTGCAGTTGAAAGATTGGTGGTTGAACGTCAGTCACCTTTTG TCTCTGAAGGAACCAACATTGATGTTTCTGAGTCACAGGCAACAAAACAAGAATCTGGCATGGTGATTGAACTCCACGTTCCTCTCGTCTGTGAAGAAGA TGAGTCTCCAGTTTCTGACGAGCTACTTACAACTGACACGTCAGGCATGGTGGCTGACACTGAGTTGCCTATCACTTCTGAAGGAAATAAGTCATCAATG TTAGATCCACCAGTTGCAATTGGAAAATCAGTTTTCGTTAATGAACCACAACCAACTTTAGTCTCTGAAGGAAACGAGTCAAGTACTTCTGTTTCACCAG TGACGGTGATTGAACCAGAGTTGCTCATGACTAAAGGAAATGAGTCGACTGGCTCCCTGCCTCCGATGAACGTTGGAAAATTAAGTGTTGCAGTGGAGTC TCAGGTGCCTGATATCAGGAAAGTTAATGGGCCTCAAGTTGTTGAGTCACCTTTTAAGAATGAAAAATCTGGAACAGTGGTGGAACCTTCATTGCCTTTG ATGACTGAAGTAAAGGATTTGAGAGTCTCTGAGTTGCCTGTTAGAACTAAGGTGGTGGAACCTTCAATGCCTTTGATCACTGAAGAAAAGGATTCGAGAG TTTCCGAGTCTCCTGTTACAATGAAGAAACCAGAAGATGTGGTTATATCTCCATTGCTTCTTACCTCTGAAGCTGTCATCAGAGTTTCCGATTCATCAGT TGCACTTGAAATATCAGAAACATTGGTTGAGCCTCCGTCACCTCTAGTTTCTGAAGAAAATGAGTCTGGAGTTTCCGAGTCATCTGCTACAACTGAAAAA GCAGAGCTGGCTGAGTCACCTTTAATTGCTGAAAAACTCGATTCCAGAGATCCTGTTGATTCTTCATCACCTCTAGTTTCTGAAGATAATGAGTCTAGAG TTTCCGAGTCATCTGCTACAACTGAAAAAGCAATGCTGGCTGAGTCGCCTTTAATTGCCGAAGAACTCGATTCCAGAGATCCAGTTGAGCTTCCGTCACC TTTAGTTTCTGAAGAAAATGAGTCGAGAGTTTCCGAGTCATCGGCTACAACTGAAAAAGCAGAGCTGGCTGAATCGCCTTTCATTACTGAAGAACTTGAT TCCAGAGATCCTGTTGAGCCTCTATCACGTCTAATTTCTGAAGAAAATGAGTCTGTAGTTTCTGAGTCATCTGCTACAACTGGAAAAGCAGAGCTGGCTG AATCGCCTTTAATTACTGAAGAACTTGATTCCAGAGATCCTGTTGAGCCTCTATCACGTCTAATTTCTGAAGAAAATGAGTCTGTAGTTTCTGAGTCATC TGCTACAACTGAAAAAGCAATGCTGGCTGAGTCGCCTTTAATTGCTGAAGAACTCGATTCCAGAGATCCAGTTGAGCTTCCGTCACCTCTAGTTTCTGAA GAAAAGGAGTCGAGAGTTTCCGAGTCATCGGCTACAACTGAAAAAGCAGAGCTGGCTGAATCGCCTTTAATTACTGAAGAACTTGATTCCAGAGATCCTG TTGAGCCTCTATCACCTCTAATTTCTGAAGAAAATGAGTCTGGAGTTTCTGAGTCATCTGCTACAACTGGAAAAGCAGAGCTGGCTGAGTCGCCTTTAAT TGCCGAAAAACTCGATTCCAGAGATCCGGTTGAGTCTCCATCACCTCTAGTTTCTGAAGATAACGAGTCTAGAGTTTCCGAGTCATCTGCTACAACTGAG AAAGCAAAGCTGGCTGAGTCGCCTTTAATTGCCGAAGAACTTGATTCCAGAGATCCAGTTGAGCCTCTGTCACCTCTAGTTTCTGAAGAAAATGAGTCGA GAGTTTCCGAGTCATTGGCTACAACTGAAAATGCAGAGCTGGCTGAATCGCCTTTAATTACTGAAGAACTTGATTCCAGAGATCCTGTTGAGTCTCTGTC ACCTCTAATTTCTGAAGAAAATGAGTCTGGAGTTTCTGAGTCATCTGCTACAACTGGAAAAGCAGAGCTGGCTGAGTCGCCTTTAATTGCCGAAAAACTC GATTCCAGAGATCCGGTTGAGTCTCCATCACCTCTAGTTTCTGAAGATAACCTCTAG
AA sequence Show only first row Show all	>Lus10034708 pacid=23162786 polypeptide=Lus10034708 locus=Lus10034708.g ID=Lus10034708.BGIv1.0 annot-version=v1.0 MESGGEAVDDHGPGWVPVKKKHRSGSKFSVRSWAGGFSGNNGSSHQLPIASVSAKFAKFAGKHKSHISKGDSKNSKSVLDEGDNGKATTNKSASLSKSKN SSSPPKPPGSNVSSNIPVSDGNQELPQKDEPERVPKMKWGDFDDDDVSSLFPGTMHEGSVRSYGSKNISLVDFDNETLSHLTSSSFSCSDLRETKSVVTA VTAVTVDSYPSLASKEEKFEDNSDESSTVSVPEVDAPIMDTHHIASDNVSDSGKTCELRHDCLKIEVPPCEETDMGVQVPKLVHDSGIQGVPEIGEVPAL NSSFSFGTRNKCEISVDGGTPPFNPDPREVNMSELSTSPVEKLSDSEMPLEGSTPLTSESPEDYVSDTSSPPVEKLSVVVTCQSPFVSEGNKQAVSNSSV TTEKTGMVAPHQPPLEVSGAAVERLVVERQSPFVSEGTNIDVSESQATKQESGMVIELHVPLVCEEDESPVSDELLTTDTSGMVADTELPITSEGNKSSM LDPPVAIGKSVFVNEPQPTLVSEGNESSTSVSPVTVIEPELLMTKGNESTGSLPPMNVGKLSVAVESQVPDIRKVNGPQVVESPFKNEKSGTVVEPSLPL MTEVKDLRVSELPVRTKVVEPSMPLITEEKDSRVSESPVTMKKPEDVVISPLLLTSEAVIRVSDSSVALEISETLVEPPSPLVSEENESGVSESSATTEK AELAESPLIAEKLDSRDPVDSSSPLVSEDNESRVSESSATTEKAMLAESPLIAEELDSRDPVELPSPLVSEENESRVSESSATTEKAELAESPFITEELD SRDPVEPLSRLISEENESVVSESSATTGKAELAESPLITEELDSRDPVEPLSRLISEENESVVSESSATTEKAMLAESPLIAEELDSRDPVELPSPLVSE EKESRVSESSATTEKAELAESPLITEELDSRDPVEPLSPLISEENESGVSESSATTGKAELAESPLIAEKLDSRDPVESPSPLVSEDNESRVSESSATTE KAKLAESPLIAEELDSRDPVEPLSPLVSEENESRVSESLATTENAELAESPLITEELDSRDPVESLSPLISEENESGVSESSATTGKAELAESPLIAEKL DSRDPVESPSPLVSEDNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034708 [exp]	0	1
					Lus10007204 [exp]	3.2	0.9568
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	9.5	0.9505
					Lus10034709 [exp]	9.8	0.9052
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036223 [exp]	10.2	0.9488
					Lus10021651 [exp]	13.0	0.9376
AT1G48090			calcium-dependent lipid-bindin...		Lus10017108 [exp]	13.0	0.9432
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10000087 [exp]	13.7	0.9488
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10005090 [exp]	14.3	0.9410
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039854 [exp]	17.7	0.9300
					Lus10037828 [exp]	19.6	0.8494

Compare expression of checked genes

Lus10034708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.