Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021651 [exp] 3150 / 0 ND / Lus10034708 [exp] 79 / 3e-14 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066900 [exp] 1503 / 0 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034709 pacid=23162921 polypeptide=Lus10034709 locus=Lus10034709.g ID=Lus10034709.BGIv1.0 annot-version=v1.0 ATGTTAGATACAGTGGTTGAATCTCAGTTGCCTTGTGGTTCTAAGGAAAGTGAGCTGACAGTTGCTATGTCTGCAGTCACAAATATAAAATCTGACACAT TGGTCGACGCTCAGTTTCCTCATATTTCTGGAGTAAATGAGTGGAGAGAATCTGAGTCTCCTGTTAAAGTTGAAAAATCAGACATGGCTGCTGAATCTCA GTTGCCTCTGTTCTCCGAAGAAAACAAGCTTAGAGTTGCTGAGTTACCTGTTACATTTGAAAAGTCAGATATTGTTATTAAATCTCATCTGCCTTTGATC TCCAATAAATACCAACCAAGGACTCTTGAATCACCGTTTAAAGTTGAAAAATCAGAGTCTGGGTTTGACTCTCAGTTGCCTGTAATGTCTGAGGAAAATG AGTTGAAAGTTTCAGAGCCACCAGATAAAAAATATGAGATATTGGTGGATTCTCATATTTCTCTCGTCTCTGATGAAAATCAGTTCAGAGCTCCTCCAAC ACATGTTATAGGTGAGAAATTAAACATGGTTGATTCACAGCTGCCTACAGTCTCCAAAGAAAATGAGTTTAGTATTTCTGGATCACCTGTTACAGTTGGC AAATCAGATTCAAATGCTGAATCTCAGTTGCCTATGATCTCTACAGGACATGGGCCTAGAATTTGTGAGCCTTACAGTACAGCTGAAAAATCAGACGCAG TGATAGAATTATTGCCATTATGTTCCAAAGATGAGTCTAGAGTTTCTGAGCTACACGTTACAGTTGAAAGAACTTTGCCTGTTCTCTCTGAAGAAAGGGA ATCAAGAGTTTCAGAGCCACCAGTGAAAAAATCAGCCATGGTTGTCGTAGTTCAGACTTCGCCTCTTACCTACGAAGAAGATGAATCAAGAGTGTCCAAG TTACAGACTAAAACTTCAGGTATGATGGTTGAACCTCGAGTGAGTATTAACTGCAAAGAAAAAGAGGCAAAAGTTCCCGACCTTCCAGTTAGAATGGAAA TTTCAGGCACCATGGTTGAGCCTCAGTCACATCAGTTGCCTCTTGGTTATGAAAAAGATCAGTCTGGGGCTTCTGAGCCACCTCTTAAAATTGAAAAATC AGGCCCCATAGCAACTCAAATTAAAACCGAATCAGCTCTACTGCAAAATCGTGGATCTGTAGTTCCTAGAGAGTCTAGTGCAGTGGCAAAGATTCACTTC CCTGCAATACCTGAGGAAAGTGAGTCAAGTATTTCTGAAGTTTCTAGTTTGAATCAGTTTTCGATGATACAAGACAGTAATTCACCCACTCCAGAGCACA GTAGGCATGAGATTCCTACAACCTCTTCTCAGATAACATCTGTTGGCAACAATGAAGCTTCATTTGGTAGACCATTATGTGATGGCCTGCAAAAAGTCCA CAAGCAGGATGATCCAACTGAAGGTGATGTAGGTGAAAGCAAAGAAAGGTTTAGGGAACGACTTTGGTGCTTTCTATTTGAGAATCTTAACAGGTCTGTG GATGAACTTTATCTTCTTTCTGAGCTAGAGTGTGACATAGATCAGATGAAAGAGGCAGTTCTTGTTCTTGAAGAGGCTGCATCTGATTTTAATGAATTAA CCGCTCGGGTTCAGGAGTTTGACAAAGTGAAAAGGTCTCCTCAATCAGTTGATGGAGCAATGAGTACTTTAAAATCTGATCACCGCAGGCCCCATGCTCT TTCATGGGAGGTCCGCAGAATGTCAACTTGCCCACACAGAGCAGATATACTTTCTTCATCTTTCGAGGCGTTCAAGAAAATTCAGCAAGAGAGAGCTGAT ATGCTTGAAGCTTATAATTCAAAGAATCTGGTGCATGGATGCTCCAGTCATCATGTTGAATCTAAGGACCTACAAAACTTAGCAGGAGAAAGTCTACTGG CATCCAGTGCTCGAAATTCAGTAATGGGGCTAGAACTAGGAAGTCCATGCTTAGAAGATCAGAAGCAGATTGGAGAATCCGGTTGTTCCAGTGAGATTGA TTTCGTACAGAACGTTGATGACTATTTGCAATCTGTTTCTGGTGTAAAGAAATCCCAGTTACTTCCCAAGGAGATTTCTACTACCGTCTCTGAAGCAGGA GAGAGTAAAAGAGTTCATGAGTTGGAGAACTTGATTCCTAGAAAAGCAAAATCATGTACAGGAAATATCTCAATGAGAACTGTTGAGATTAATGATCAGG TAAAGAAGCAAGCATATCCTTCTGAGAAGGACAAAGAAAAGAGGAATTCTGGTCCATTCAAGTCCATGGATGCATGGAAAGAAAGGAGGAACTGGGCAGA AATACTTTCAACTCCTTCTCGTACCTCCTCCCGTATATCACATTCACCAGGGTTGAACAGTAAAAGTGCGGAGCGTGCACGCGTTTTGCATGATAAACTA ATGTCACCTGAAAAGAAAAAGAAGAATGCTTTGGATTTAAAGAAAGAAGCTGAAGAAAAGCATGCACGAGCAAGGAGAATCAGAAATGAGTTAGAGAATG AACGTGTTCTAAGACTGCAGCGCACCTCAGAGAAGTTGAACCGCATGAATGAGTGGCAGGCTGTACGTACCATGAAGTTACGGGAGGGAATGCATGCTCG CCACCAGCGAAGTGAATCTAGGCATGAAGCTTATCTAGCACAAGTTGCTAGGAGAGCTGGTGATGAAAGCAGTAAAGTCAATGAAGTCCGGTTTATCACT TCTATGAATGAAGAAAATAAGAAGCTCATGCTGCGTCAAAAACTTCATGATTCAGAGTTGAGGAGAGCTGAAAAGCTTGAGGTTAAAAAATTTAAACAAA AGGAGGACATGGCTCGAGAGGAAGCAGTTTTAGAACGTAGGAAGCTCATTGAAGCTGAAAAGTTACAACGCCTGGCTGAGATTCAAAGGAGAAAGGAAGA AGCACAAATAAGAAGGGAAGTTGAGCGCAAAGCGTCAAGTGCAGCACGCGAAGCAAGGGCAATGGAGCAACTTCGAAAACGAGAAGAAAGAGCCAAGGCC CAGCAAGAGGAAGCTGAAATGCTGGCTCAGAAATTAGCTGAGAGACTGAGGGAAAGTGAGCAACGTCGTAAGTTTTACCTGGAACAAATACGGGAGAGGG CTTCAATGGATTTTCGGGATCAATCTTCACCTTTATTGAGACGATCTGTGAGTAGAGATGGTCAAGGGCGGAGTACCGTAACAAGTAGTAGTGAAGATTG TCAAGAACAGAGTCCGGCAGGTCCAGGAAGTTCTGGTCTAGCACCTGGGAATACAACCCAGCAAAATTCACTCAAGCGACAGATTAAAAAGATACGACAA AGGCTAATGGCTTTGAAATATGAGTTCATTGAGCCGCCAGTTAGTTGTGAGACTTCTAGTTTTGCATATAGGACAGCAGTGGGAACTGCAAGGGTGAAAA TTGGACGGTGGATTCAAGAACTCCAGAGGTTTCGTCAAGCTAGAAAAGAAGGAGCCTCCAGTATAGGTCTCACGACTGCTGATATGATCAAGTATCTTGA GGGTCGAGACCCTGAGCTCCAGGCTTCTCGACAAGCAGGGCTGCTTGATTTTATTGCTTCAGCTCTGCCCGCTTCGCATACTTCCAAACCTGAAGCTTGT CAGGTCACAGTACACTTCTTAAAACTTCTGAGGGTGGTATTATCCATGTCTACAAATAGGAGTTACTTTCTAGCTCAGAATCTTTTACCCCCAATTGTCC CCATGTTATCTGCAGCACTTGAGAACTACATAAAAATGGCCGCATCTTCAAATGCCCCTGGCTGTGCCACTGTATCATCAGGCAAACCATCAATTGAAAT TGTTGGATCAGGCTCTGAAGTGCTGGACAATTTCTTATGGATTGTCGGAGCAATCATTGGTCATACTGGATCTGATGAACGAGAAAATCAAATGCAAGAT GGCCTAATTGAGCTATTAACTGCATATCGGGTTATTCATAGGCTGTGTGATCTCTTTGTACTCTATGACAGGCCTCAGGTTGAGGGGTTGCCGTTCCCTT CTTCTATTCTCCTAGGTGTTCATCTTTTGGTTGTTTTGACATACAAAGCACGATCCAATAGTTCCATTGATTTGGCATCTTCACCAATTGAGATGATGCT AAATTTTGATAGTCAAGAAGGAAAATCTGCAGAGAATTCTAAGTTTGCAAATTCCTCAAATGGCATATCAGCATGTGAGAGATCTTCACTATCTGAACGG CATGGAAGTCGAGTTGTAACTTCTCCAGATCCTCCAGTGGATGGACTGTGTAGTATTGCTAAGGGTGATGAACCAGCATCAGTTGTTAAAGATGGCGAAA CATCCCAAACTCGCTGTTCAGTTGAGTTGAACGGGGGCTGCACGAAGCTAGCAGACGATCAAATTCTGACCGAGGAAAAGTGTGCGAAACAATCAGACAG TGCTGGCTTAGAACAGAAGAATCATAACCTACTTAGCAGGAAGCAGCCTGTAGCTGATCTTCTTTCCGCAATATCTGAAACAGGGCTAGTCAGTCTTCCT TCTTTGATAACGTCTGTTCTGTTACAGACTAGCCCTCGGCCATTCTCCGAACAGGGCTCCTATATCCTACCGTCCAACTTTGAAGAAGTGGCAACTGGTG TTCTCAAGGTTGTAAATAACCTGGCTCTTCTGGATGTTTCGTTCATACAGAGAATGCTAGCAATGCCAGATCTGAAAATGGAGTTTTTCCATCTGATGAG CTTCCTTCTATCTCATTGTACCAGCAAATGGAGAGGAGCTACTGACCAGATCGGCTTGCTGCTTCTGGAAGCTCTATTGCTTCTTGGTCATTTTGCTTTG CTCCACCCTGAAAATCAAGCTGTCCTTCGCTGGGGTAAAAGTCCAACCATACTTCACAAGGTCTGTGATCTGCCATTTGCGTTCTTCAGTGACCCCGATT TGATGCCCATTTTAGCTGGCACATTAGTTGCCGCCTGCTATGCATGTGAGCAGAACAAGAGTGTGGTACAGCAAGAACTGTGCGTCGATATGCTGCTCTC CTTGCTTAAGTCATGTAGGAAATCCAATCCAACGGCTGAAAACCCACCAGCCGAGGATTGTAGTGGAAGTAATCAGCACGCTTTTGAGTTTAAAAAGTCG CTTGCGGATAACCCTTTGAAACCCATTCGTAACTACGTTAGACCAGGCAGGTATTCCTTGGGGAGCAGTGTGAGCAGTATTAGGAGCGGAAAGCCGAAGA GCCACAGGGATGTGAGGCCGGCAAAGAGCATTGGTGGTGAAGAATTGGGGTTGAAGCAAAGTTTAGGAGCTCCCGAAGCTTCCGCAATGCTGCATTGCAA ATTCTCTAGTGCCTTCATCGATAGAGCAGAGCAGTTCTTTTCTTCGGAGAATGGAGATGTATGA
AA sequence Show only first row Show all	>Lus10034709 pacid=23162921 polypeptide=Lus10034709 locus=Lus10034709.g ID=Lus10034709.BGIv1.0 annot-version=v1.0 MLDTVVESQLPCGSKESELTVAMSAVTNIKSDTLVDAQFPHISGVNEWRESESPVKVEKSDMAAESQLPLFSEENKLRVAELPVTFEKSDIVIKSHLPLI SNKYQPRTLESPFKVEKSESGFDSQLPVMSEENELKVSEPPDKKYEILVDSHISLVSDENQFRAPPTHVIGEKLNMVDSQLPTVSKENEFSISGSPVTVG KSDSNAESQLPMISTGHGPRICEPYSTAEKSDAVIELLPLCSKDESRVSELHVTVERTLPVLSEERESRVSEPPVKKSAMVVVVQTSPLTYEEDESRVSK LQTKTSGMMVEPRVSINCKEKEAKVPDLPVRMEISGTMVEPQSHQLPLGYEKDQSGASEPPLKIEKSGPIATQIKTESALLQNRGSVVPRESSAVAKIHF PAIPEESESSISEVSSLNQFSMIQDSNSPTPEHSRHEIPTTSSQITSVGNNEASFGRPLCDGLQKVHKQDDPTEGDVGESKERFRERLWCFLFENLNRSV DELYLLSELECDIDQMKEAVLVLEEAASDFNELTARVQEFDKVKRSPQSVDGAMSTLKSDHRRPHALSWEVRRMSTCPHRADILSSSFEAFKKIQQERAD MLEAYNSKNLVHGCSSHHVESKDLQNLAGESLLASSARNSVMGLELGSPCLEDQKQIGESGCSSEIDFVQNVDDYLQSVSGVKKSQLLPKEISTTVSEAG ESKRVHELENLIPRKAKSCTGNISMRTVEINDQVKKQAYPSEKDKEKRNSGPFKSMDAWKERRNWAEILSTPSRTSSRISHSPGLNSKSAERARVLHDKL MSPEKKKKNALDLKKEAEEKHARARRIRNELENERVLRLQRTSEKLNRMNEWQAVRTMKLREGMHARHQRSESRHEAYLAQVARRAGDESSKVNEVRFIT SMNEENKKLMLRQKLHDSELRRAEKLEVKKFKQKEDMAREEAVLERRKLIEAEKLQRLAEIQRRKEEAQIRREVERKASSAAREARAMEQLRKREERAKA QQEEAEMLAQKLAERLRESEQRRKFYLEQIRERASMDFRDQSSPLLRRSVSRDGQGRSTVTSSSEDCQEQSPAGPGSSGLAPGNTTQQNSLKRQIKKIRQ RLMALKYEFIEPPVSCETSSFAYRTAVGTARVKIGRWIQELQRFRQARKEGASSIGLTTADMIKYLEGRDPELQASRQAGLLDFIASALPASHTSKPEAC QVTVHFLKLLRVVLSMSTNRSYFLAQNLLPPIVPMLSAALENYIKMAASSNAPGCATVSSGKPSIEIVGSGSEVLDNFLWIVGAIIGHTGSDERENQMQD GLIELLTAYRVIHRLCDLFVLYDRPQVEGLPFPSSILLGVHLLVVLTYKARSNSSIDLASSPIEMMLNFDSQEGKSAENSKFANSSNGISACERSSLSER HGSRVVTSPDPPVDGLCSIAKGDEPASVVKDGETSQTRCSVELNGGCTKLADDQILTEEKCAKQSDSAGLEQKNHNLLSRKQPVADLLSAISETGLVSLP SLITSVLLQTSPRPFSEQGSYILPSNFEEVATGVLKVVNNLALLDVSFIQRMLAMPDLKMEFFHLMSFLLSHCTSKWRGATDQIGLLLLEALLLLGHFAL LHPENQAVLRWGKSPTILHKVCDLPFAFFSDPDLMPILAGTLVAACYACEQNKSVVQQELCVDMLLSLLKSCRKSNPTAENPPAEDCSGSNQHAFEFKKS LADNPLKPIRNYVRPGRYSLGSSVSSIRSGKPKSHRDVRPAKSIGGEELGLKQSLGAPEASAMLHCKFSSAFIDRAEQFFSSENGDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034709 [exp]	0	1
AT5G62620			Galactosyltransferase family p...		Lus10036685 [exp]	2.8	0.8787
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	4.0	0.9159
AT3G12010			unknown protein		Lus10021085 [exp]	6.6	0.8167
					Lus10034708 [exp]	9.8	0.9052
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	11.9	0.8799
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10018137 [exp]	14.0	0.8456
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10037708 [exp]	14.1	0.8507
AT5G11430			SPOC domain / Transcription el...		Lus10008108 [exp]	14.3	0.8413
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10018479 [exp]	15.5	0.8434
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039509 [exp]	15.6	0.8259

Compare expression of checked genes

Lus10034709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.