Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61280 83 / 1e-18 Remorin family protein (.1) AT1G13920 56 / 7e-09 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021650 [exp] 266 / 2e-84 AT2G47210 552 / 0.0 myb-like transcription factor family protein (.1) Lus10037111 [exp] 54 / 2e-08 AT1G13920 91 / 4e-21 Remorin family protein (.1) Lus10036964 [exp] 53 / 7e-08 AT1G13920 87 / 2e-19 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049700 [exp] 109 / 6e-29 AT5G61280 113 / 2e-30 Remorin family protein (.1) Potri.010G160900 [exp] 57 / 2e-09 AT1G13920 99 / 1e-23 Remorin family protein (.1) Potri.008G093300 [exp] 56 / 7e-09 AT1G13920 80 / 1e-16 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10034714 pacid=23162764 polypeptide=Lus10034714 locus=Lus10034714.g ID=Lus10034714.BGIv1.0 annot-version=v1.0 ATGTCGCTGTATGCAAAGCTTAGTTTTCCTCTCAACCCAGCGTTTGCTTGCAGGCATTGTGCTCCTGTTCATTGCTCATATTCAGATTCTATTCCCCACA GCTACAACTCCTTAAACCCTATCCTGAATTTTCTCCACGATCTTAAATCGAATCAGCAAACAGAATCGAAGAACCAGTTGAAATCTTGCCAGATGGAGAG TTTAGTCAAGCAGAGAAGCACCATTCTAACTTCTTTCTTATTTGATACTCATGTCATAAGAGTAACTTTCTCCGAAAATCAAGAATCCCTCAATGGAGGC GAATCTTCTAATCGAACACAAGAGAATCAGGATCAAAGGGTGCAGCAGCAGGAAAGTGACTTCCTTGCTAAAAGGCCAAGCCTTTCTTCTTCCACTATGA GACCCGAACAAGGAAAGCAGTATCAAAGAAGCTATTCAACGAGAAGGGAAGCCGATGTTGCAGGACCAGATTCTTGGGAGAATGCTCAGCTTAGGAAGAT CAGCAAAAGGTATGAGAAGATGAAGTCCAAGGTTGTTGCTTGGGAGGAAGCAAAGAAGATGAAGGCCAAACTTCACATGGAAAGAAAAAGGAATGAGTTG GAAATGAGAACAAGAAGGAACATGCAGCATTACCAGAGCAAGCTAGTGAGGATTGACATGATTGCTAGTGGAGTAATGGAACAGCTGGATGAGAAAAGGA GAAAAGAAGAAGCTGAGGTGAAAGAGAAGGCTAGGCACGGCGGTTCGAAAGCTCGTGGTAGCTCAAAGAACTCCTGCTTCTGGTGGAACTAA
AA sequence Show only first row Show all	>Lus10034714 pacid=23162764 polypeptide=Lus10034714 locus=Lus10034714.g ID=Lus10034714.BGIv1.0 annot-version=v1.0 MSLYAKLSFPLNPAFACRHCAPVHCSYSDSIPHSYNSLNPILNFLHDLKSNQQTESKNQLKSCQMESLVKQRSTILTSFLFDTHVIRVTFSENQESLNGG ESSNRTQENQDQRVQQQESDFLAKRPSLSSSTMRPEQGKQYQRSYSTRREADVAGPDSWENAQLRKISKRYEKMKSKVVAWEEAKKMKAKLHMERKRNEL EMRTRRNMQHYQSKLVRIDMIASGVMEQLDEKRRKEEAEVKEKARHGGSKARGSSKNSCFWWN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61280			Remorin family protein (.1)		Lus10034714 [exp]	0	1
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	2.0	0.8891
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010959 [exp]	2.4	0.8688
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	2.4	0.8686
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	3.6	0.8345
AT1G11270			F-box and associated interacti...		Lus10025893 [exp]	5.3	0.8642
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	5.5	0.8433
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	5.9	0.8507
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10039993 [exp]	6.7	0.8320
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031269 [exp]	6.9	0.8373
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	7.3	0.8495

Compare expression of checked genes

Lus10034714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.