Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04780 676 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 458 / 6e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 451 / 1e-148 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 445 / 9e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 439 / 8e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 440 / 3e-144 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 434 / 2e-143 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G03880 431 / 2e-143 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G52630 426 / 2e-142 MEF1 mitochondrial RNAediting factor 1 (.1) AT4G33170 438 / 3e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021649 [exp] 590 / 0 AT5G04780 342 / 4e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 452 / 4e-151 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 454 / 4e-150 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 452 / 2e-149 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022629 [exp] 445 / 1e-148 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011323 [exp] 439 / 7e-147 AT5G52630 790 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10012206 [exp] 439 / 1e-146 AT5G52630 786 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10006123 [exp] 436 / 1e-144 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 440 / 3e-143 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241100 [exp] 667 / 0 AT5G04780 572 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 455 / 6e-153 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 461 / 2e-152 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 462 / 5e-152 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 452 / 2e-151 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G053500 [exp] 450 / 3e-151 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.015G018700 [exp] 455 / 4e-150 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 449 / 4e-150 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G075000 [exp] 449 / 5e-150 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 452 / 7e-150 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034715 pacid=23162906 polypeptide=Lus10034715 locus=Lus10034715.g ID=Lus10034715.BGIv1.0 annot-version=v1.0 ATGATTAATTTGACTGGGTTATGCCGTAGAACGAGTATCAATGACGCCGTCATTAAGCTATGCCGTATGTTTCTATCCACGACAGCTCGCCCTGCCATGC CCGATACCTCATTTGGGTATGTATTTACCAGCCAGATTGCAAAGGTGCATGCTTTACTACAGTCGTGTGCGAAAACGAAAAACCCCATTGGAGGAAAGGC ATGCCACAGTCGTATTCTTCAGTTGGGTTATGGATCGGATACTTTGACGTCGAACATGCTGATGAATATGTACTCGAAATGTGGTTCAGTAGTTACTGCC CACAAGGTGTTCGATAGAATGCCTGAAAGAAGCTTGGTCTCGTATAACACCATCATCAGTGCGTATACCCGCATGGGAGACTGCGAGGGGAATGCTCTAC TCCTTTTCGTGCAAATGCGAAGAGAAGGGAATCATCCCATGAGCGAATTCACGGTTTCAAGTGTTCTTTGTGCTTGTGCGTCAAAATCCGATGTCCTTGC ATCTAGGCAACTACATTGTTTTGCCATCAAGGCATCCATGGACGACAACGTCTTTGTTAGCACGGCATTGCTCGATGTTTATTCCAAAAGTGGCTTCGTC TATGATGCGAGTTGTGTTTTCGATGGGATGTCCGAGAAAAGTGATGTCACGTGGAGTTCAATGGCTGCTGGTTTAGTCCAGAATAAGATTTACGAGGAGG CTTTGGTGTTATTCACCAGAGCTCGGGCAACAGCAGGGCTCGAAGATGACAAGTTCATGATGTCTTCTGTTATCAGTGCCTGTGCAGGTTTGGCAGCTCT GGTACAAGGAAGACAAGTGCATTCCATTGTTTGCAAAACTGGGTTTGGATCAAACAACTTTGTGGCTTCCTCTCTGGTAGATATGTACGCGAAATGCGGG ACTGTTAAAGATGCCTTCAGATTGTTTCAGGATATGGAAGAAGACAACAAGAATGTGGTTCTGTGGAACGTTATCATCTCTGCATTTGCCAAGCATTCCC GGTCGCTGGAAGTGATGGTTTTGTTTGAGAAAATGCAGCAGGCCGGTATGGAGCCAGATGAAGTTACGTATATTTCGGTACTCACAGCATGTAGCCATAT GGGTCTGGTTAACGAGAGTCGGACCTATTTCCGCCTCATGACAGAACAACACAATGTATCTGCCAATGTCCTCCACTACTCTTGTATGGTTGATGTATTG TGTAGGGCAGGTGTCGTTCATGAAGCTAACAAGCTAATGAAGAACATGCCCTTCGATGCTACTGCTTCGATGTGGGGATCGCTTCTAGCATCTTGCAGGG TCCGTGGCAATGTTGAGTTAGCAGAGGTGGCAGCGAGAAACTTGTTCGAGATGGAACCGAGGAATGCAGCAAACTACGTTATGCTGTCGAACGCATATGC TGCTGGAAACCAGTGGGAGGATGTGTCAAGAACAAGGAAGCTCATCAAAGAGAATGAGGTGAATAAAGAGAGAGGAAATAGTTGGCTTGAGATCAAGGAC AAGGTTCATACTTTCATGGCTGGAGAAAGAAACCATCCTAGAACCCGGGAGATTTTTGTGAGATTGGATAGGCTGATGGAAGAGGCAAAGGAAAGAGGAG GCTATAAGCCTGAAACTTGCTATGACTTCCATCATGTGGATGAAAGCAAGAAGCTGGAACAGTTGAAACATCACAGTGAGAAGCTAGCTGTTACTTTCGG ACTCATGAGCTTGCCTGTCAGCATACCTATCAGGATCATGAAGAATCTCCGGATTTGCGGGGACTGCCATTCTTTTATGAAGTCTGTATCTAGTGTTTCA GGGAGGGAAATTATCGTCAGGGATACTAACAGGTTTCACCATTTCTTGAATGGACATTGTTCTTGCAACGACTTTTGGTAA
AA sequence Show only first row Show all	>Lus10034715 pacid=23162906 polypeptide=Lus10034715 locus=Lus10034715.g ID=Lus10034715.BGIv1.0 annot-version=v1.0 MINLTGLCRRTSINDAVIKLCRMFLSTTARPAMPDTSFGYVFTSQIAKVHALLQSCAKTKNPIGGKACHSRILQLGYGSDTLTSNMLMNMYSKCGSVVTA HKVFDRMPERSLVSYNTIISAYTRMGDCEGNALLLFVQMRREGNHPMSEFTVSSVLCACASKSDVLASRQLHCFAIKASMDDNVFVSTALLDVYSKSGFV YDASCVFDGMSEKSDVTWSSMAAGLVQNKIYEEALVLFTRARATAGLEDDKFMMSSVISACAGLAALVQGRQVHSIVCKTGFGSNNFVASSLVDMYAKCG TVKDAFRLFQDMEEDNKNVVLWNVIISAFAKHSRSLEVMVLFEKMQQAGMEPDEVTYISVLTACSHMGLVNESRTYFRLMTEQHNVSANVLHYSCMVDVL CRAGVVHEANKLMKNMPFDATASMWGSLLASCRVRGNVELAEVAARNLFEMEPRNAANYVMLSNAYAAGNQWEDVSRTRKLIKENEVNKERGNSWLEIKD KVHTFMAGERNHPRTREIFVRLDRLMEEAKERGGYKPETCYDFHHVDESKKLEQLKHHSEKLAVTFGLMSLPVSIPIRIMKNLRICGDCHSFMKSVSSVS GREIIVRDTNRFHHFLNGHCSCNDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	0	1
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	1.4	0.8739
					Lus10029579 [exp]	1.4	0.8703
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	2.4	0.8536
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	2.8	0.8500
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	4.0	0.8365
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	4.5	0.8466
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	5.3	0.8395
AT4G39530			Tetratricopeptide repeat (TPR)...		Lus10014452 [exp]	5.9	0.7548
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10004892 [exp]	6.6	0.8070
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	8.9	0.7923

Compare expression of checked genes

Lus10034715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.