Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51980 217 / 4e-67 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G25440 208 / 1e-63 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G49200 172 / 5e-50 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 166 / 2e-47 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT2G19430 55 / 3e-08 DWA1, AtTHO6 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) AT3G51930 53 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 52 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 52 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G21040 51 / 7e-07 FBX2 F-box protein 2 (.1.2) AT5G50230 50 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021648 [exp] 401 / 1e-138 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1) Lus10021656 [exp] 357 / 5e-121 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10032066 [exp] 322 / 5e-108 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10014595 [exp] 301 / 4e-96 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10001652 [exp] 281 / 2e-95 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021655 [exp] 280 / 2e-92 AT4G25440 169 / 3e-48 zinc finger WD40 repeat protein 1 (.1) Lus10021640 [exp] 262 / 1e-87 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1) Lus10032062 [exp] 255 / 8e-83 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10033255 [exp] 229 / 5e-71 AT5G51980 285 / 3e-91 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134800 [exp] 206 / 6e-63 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.015G137200 [exp] 200 / 2e-60 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 198 / 9e-59 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G109500 [exp] 57 / 1e-08 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 56 / 1e-08 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 52 / 2e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 52 / 3e-07 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 51 / 5e-07 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.012G060800 [exp] 52 / 6e-07 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.003G202700 [exp] 51 / 6e-07 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10034716 pacid=23162918 polypeptide=Lus10034716 locus=Lus10034716.g ID=Lus10034716.BGIv1.0 annot-version=v1.0 ATGGTGCTCAAATCGAATGTGTTCGAACGACTTGGGGTTTCTGGACATGATCAGAAGAATAGTCGGACCGTTTGTCGATTCTGGAAAGTGGGAAATTCCA CTCATCAACCCTGCAGATACTTCCACGGTGAATCTCCTTCTGCGCTCCCGTCTCCATCACCGTACCGTCGTTCTAACGTCTACAATCGAGGAGGATCTCA GTACTCGTCACAGCACCTCGTTCCAATGTCTACATTCGACCATCTCGATCAAAACCACGGTCGTCTACTCCTGGCTCTCTCTTGCTTCTGGGGTTCTAAG CTTTTCTGTGGAAGCAGTGATGGGGCTCTTCAAACATGGAATTCCATAAGTGGTGAAGTTGTAGGGTCACTGAAAGTTGGTGGGAAGATTGGGTGTATGA TTTTGGAGGGTGATTGGCTATATGTTGGATTGACAAGTATGGTCAAGGCATGGAACATTCACTCAGGTGTTCAACACATTCTCGAAGGCCCAGTTGGCCA AGTTCACGCATTGACTGTTGACTATGAGATGGGGATTGTGTTTGCTGCCGTTGAAGATGGTATCATTTGGGCGTGGAAGACCAGTACCGATGAGCAAGGA AATCTCTTCCAGTCAGTTGCATCACTGATTGGCCATACAATTGCAGTTATTTCCTTGAGATTTGGAGCAGGTAGTAGGGTGTATTCGGGTTCCATAGATG GAACCATCAAGGTTTGGGATGGTAGAATTTCTCAATGCATACAAACATTAAAGGGGCATGATGATGCAGTGACGTGTCTCCTCTGCTATAGATGCTACTT CTTGTCCTGCTCACCGGATAAGAAGATCGAAGTATGGGAAGAGTGTGGGAAAGAGATGTTGTTGTGCTCTTGGAACAATGATTCGGTTGGAATGTATGAG GTTCCATCATTTGTTGAGAAAGGGAGAATGTACTCGAAATGTGAAGTAAGGAGCTTGGGAGTAGGTACTGAAGGAATGTTCTTCACTGGAGATGCTTCTG GTGTGGTGACTGTATGA
AA sequence Show only first row Show all	>Lus10034716 pacid=23162918 polypeptide=Lus10034716 locus=Lus10034716.g ID=Lus10034716.BGIv1.0 annot-version=v1.0 MVLKSNVFERLGVSGHDQKNSRTVCRFWKVGNSTHQPCRYFHGESPSALPSPSPYRRSNVYNRGGSQYSSQHLVPMSTFDHLDQNHGRLLLALSCFWGSK LFCGSSDGALQTWNSISGEVVGSLKVGGKIGCMILEGDWLYVGLTSMVKAWNIHSGVQHILEGPVGQVHALTVDYEMGIVFAAVEDGIIWAWKTSTDEQG NLFQSVASLIGHTIAVISLRFGAGSRVYSGSIDGTIKVWDGRISQCIQTLKGHDDAVTCLLCYRCYFLSCSPDKKIEVWEECGKEMLLCSWNNDSVGMYE VPSFVEKGRMYSKCEVRSLGVGTEGMFFTGDASGVVTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10034716 [exp]	0	1
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	3.5	0.8633
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	4.2	0.8500
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10018692 [exp]	4.2	0.8530
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	4.2	0.8710
AT2G22330		CYP79B3	"cytochrome P450, family 79, s...		Lus10000239 [exp]	5.9	0.8600
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	8.4	0.8693
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	9.4	0.8493
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	11.4	0.8496
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10027279 [exp]	11.5	0.8513
					Lus10025225 [exp]	13.0	0.8681

Compare expression of checked genes

Lus10034716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.