Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39380 88 / 4e-20 Plant calmodulin-binding protein-related (.1) AT5G15430 78 / 8e-17 Plant calmodulin-binding protein-related (.1) AT5G07820 73 / 6e-15 Plant calmodulin-binding protein-related (.1) AT5G61260 70 / 6e-14 Plant calmodulin-binding protein-related (.1) AT5G04020 43 / 6e-05 calmodulin binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021647 [exp] 381 / 5e-127 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1) Lus10000141 [exp] 127 / 4e-34 AT5G15430 57 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10003472 [exp] 127 / 7e-34 AT5G15430 58 / 2e-08 Plant calmodulin-binding protein-related (.1) Lus10000209 [exp] 121 / 7e-32 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10015733 [exp] 121 / 9e-32 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10030701 [exp] 95 / 1e-22 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1) Lus10042442 [exp] 48 / 2e-06 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Lus10026227 [exp] 48 / 2e-06 AT5G10660 61 / 7e-10 calmodulin-binding protein-related (.1.2) Lus10039544 [exp] 42 / 0.0002 AT3G54570 121 / 9e-29 Plant calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090200 [exp] 99 / 5e-24 AT5G39380 134 / 4e-33 Plant calmodulin-binding protein-related (.1) Potri.015G049600 [exp] 95 / 7e-23 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1) Potri.012G067100 [exp] 81 / 5e-18 AT5G07820 96 / 4e-21 Plant calmodulin-binding protein-related (.1) Potri.006G274600 [exp] 55 / 7e-09 AT5G24880 60 / 2e-09 unknown protein Potri.018G005500 [exp] 54 / 1e-08 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Potri.001G024100 [exp] 44 / 3e-05 AT2G38800 134 / 2e-32 Plant calmodulin-binding protein-related (.1) Potri.003G201400 [exp] 44 / 5e-05 AT2G38800 145 / 4e-36 Plant calmodulin-binding protein-related (.1) Potri.006G043900 [exp] 40 / 0.0005 AT5G04020 145 / 6e-35 calmodulin binding (.1) Potri.016G041100 [exp] 40 / 0.0006 AT5G04020 114 / 4e-25 calmodulin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [flax] [poplar] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Lus10034717 pacid=23162780 polypeptide=Lus10034717 locus=Lus10034717.g ID=Lus10034717.BGIv1.0 annot-version=v1.0 ATGGTGGGGCCATCAGATGATTGCTTGAGTGTGATGTCATCAGCAGACAGCTGTGAGACTGACCATGTCCTGGAGCAGAAAGCAATGGAGAGAGTGCTGG CTTCCAGGATTAATGCTCATTTCAGTAGAGGTACACGGCGTAGAGCTTCGATGAACATTGGAGGTTACAAAGAAGAGCCAGAAAGAAAACTCAAGTTCAG GCCAGGAAGAGTGATTGAGTTCAAGTCTGAGATTAACAGTCCTTGCAGGAGGCTCAAGTTCAAGAGGAGATCAACACCGAGGAGCGGTATTGGTAGTCCC AAATCAAATGTTGGGATGATTTTCGGAGTGCTAAGGAAGGCAGGAGGAGGGAGGAGAGAAAGTACCAACAATAGAGTTCAGTTTGCAGATATTGATGCTG CTGTTGAGAAAGTGGTTCTGAGACATCAAGTGATGCAACACGAGAAAGGGTTGTCACAGGCATCCTTGAACAATGTGATTGAAGAAACAGCAAGTAAGCT TGCTGAAGATAGGAAGAGCAAAGTGAAGGCTCTTGTTGGTGCTTTTGAGTCATTGCTCACTCTTCAAGATTCCAAACCCACTTCTCCAACTGTTACTGCA TGA
AA sequence Show only first row Show all	>Lus10034717 pacid=23162780 polypeptide=Lus10034717 locus=Lus10034717.g ID=Lus10034717.BGIv1.0 annot-version=v1.0 MVGPSDDCLSVMSSADSCETDHVLEQKAMERVLASRINAHFSRGTRRRASMNIGGYKEEPERKLKFRPGRVIEFKSEINSPCRRLKFKRRSTPRSGIGSP KSNVGMIFGVLRKAGGGRRESTNNRVQFADIDAAVEKVVLRHQVMQHEKGLSQASLNNVIEETASKLAEDRKSKVKALVGAFESLLTLQDSKPTSPTVTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39380			Plant calmodulin-binding prote...		Lus10034717 [exp]	0	1
					Lus10014248 [exp]	4.9	0.8577
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10020109 [exp]	10.9	0.8476
					Lus10021782 [exp]	15.7	0.8237
					Lus10007927 [exp]	18.1	0.8237
					Lus10023587 [exp]	20.2	0.8237
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	22.2	0.8237
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	24.0	0.8237
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	25.6	0.8237
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	27.2	0.8237
AT2G34320			Polynucleotidyl transferase, r...		Lus10039942 [exp]	28.6	0.8237

Compare expression of checked genes

Lus10034717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.