Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15430 45 / 7e-05 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021647 [exp] 559 / 0 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1) Lus10015733 [exp] 101 / 2e-22 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10003472 [exp] 99 / 2e-21 AT5G15430 58 / 2e-08 Plant calmodulin-binding protein-related (.1) Lus10000209 [exp] 56 / 5e-08 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10000141 [exp] 45 / 0.0002 AT5G15430 57 / 1e-08 Plant calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067100 [exp] 73 / 2e-13 AT5G07820 96 / 4e-21 Plant calmodulin-binding protein-related (.1) Potri.015G049600 [exp] 70 / 1e-12 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034718 pacid=23162896 polypeptide=Lus10034718 locus=Lus10034718.g ID=Lus10034718.BGIv1.0 annot-version=v1.0 ATGGCGGACAACGACATATCTGATACCATCTTACAGCTCCCAATGGCCACAGAAACCAATGCGATTCCCGACAAAGATTCGTTCTTACTGGTCCCAACAG ACAGTGGAAACAAGGATGAAGCCTTGGTTACAGCTGCACATGATCACAAGATCAGCAATAAAGGCCATTTAAGAAGGTTCTCAACAGGAAACATTGCATT GCCATACACCAAAGTCAAGGTCCTTTCGCGGTACCTAGAGTCCTCGTCGATTGGCTCATGCCACGATTACTGCAAGTACAGTACGAGGAGAGAAGGTGAT GAGGCAACAGCTCATGATGATCATTCCTCAACATTCATGAAGAGAGTCAATGATGCATTGGGGAAAGGGCATCAGATGTTCAAGCATACTGCTACTTTGA TGGAAAGGAGGAAGAAGAGGTCAATCCATGTCACCCCAACAACAAAGACTGCATCTTTAAGCCTCGACAGCCCGAAAACTGATCATTCACCACTTCCATC CAACAGCAGAAGATCAGCTAGGACCAATTCAAAGGTTGTTCATAATTCACCTAGGAGACCAGATTCTGATGTGGCATCAAAGCATCATGCTGGTGGTGGC GGTGTTCGATCGAGGCTCAACTCATCGTCTGCATCTGCAATTTCTGTTGTTGGCAGTCCAAAGATCGAATCGAAACAGGATGATGGAACGCCTAAGTTGG TGAGAAGTAAGACAACATTGTCAAAACAACTGTCTGGTTCAGAAATTGGTTTAGTTGCTACTAGTCCTCCTCCGAGATATGAGAAGCACAGAAGATCCAA GTCAGTCTCCAAACTGGAAATTTCTTCTTCTTATTCTTCTTCTTCACCTTCAGTCGACAAGCTGCCGATCCTGTCAAAGATCTACTCATCATCACCAACA ATTGTATCAGAAATTGATGGTGTTTCATCAGCTTTAACCAACCCAAAGTTCCAAAGATTTGAGGCTTTCATCTCCCCATTAATACACAGGAGAGGAGATA GCATGTCCAAATTGTCACTGTCTTCTTCTTCTTTGAAAGAAGTTGATGGCTCCTCCAAAAAGTCTCTGCTGCCAAAAAGTCTCAGTGCTAAAGGAGACAA AAAAGATCACAGAAGTAGTAGAAGTCTAGAAGAAGCATTGGTGTCGTCAAGTCCAATTGAAGGTTTGAGAAAATCTAGGAGTATTTCCGTCAGAACAGAA CAAAAGGGCTCTGGCACTGATCATGATCAGGAGAAGAAGCTTGTTGAAAAAGGAACTGTTGCTTCTCCTGCAAGGCACAAGTTTTTGAGGAGGCAGTCTA CATCAGGGCCTCTTAGGAGCTCATGGAAGAAGCTTACTCCAAGGATGAATGGTGACAAGAGTGAGAATAGGAAACCTATCCTCTCCACATTGAAAGAGGA TCATCATCAACATCCTAACAATCTCAAGAAACTTGAAGCTGAAGAAACCAAGGATGAGAAAGGTTCTTCAGATGAGAAAGCACCGAACTCCACAGAAGTA ATGAAGTCATCATCTTTAGTCTCACAAGCAAAACATGAGGCCACTAGCAAGAACACTAAGTCAAGTAGTAGTTCAACAAAGAAGAGGTTCATCAAGCGTG CTCAAAATGTTCCTCAGAGTCCACTGTTCCACTAG
AA sequence Show only first row Show all	>Lus10034718 pacid=23162896 polypeptide=Lus10034718 locus=Lus10034718.g ID=Lus10034718.BGIv1.0 annot-version=v1.0 MADNDISDTILQLPMATETNAIPDKDSFLLVPTDSGNKDEALVTAAHDHKISNKGHLRRFSTGNIALPYTKVKVLSRYLESSSIGSCHDYCKYSTRREGD EATAHDDHSSTFMKRVNDALGKGHQMFKHTATLMERRKKRSIHVTPTTKTASLSLDSPKTDHSPLPSNSRRSARTNSKVVHNSPRRPDSDVASKHHAGGG GVRSRLNSSSASAISVVGSPKIESKQDDGTPKLVRSKTTLSKQLSGSEIGLVATSPPPRYEKHRRSKSVSKLEISSSYSSSSPSVDKLPILSKIYSSSPT IVSEIDGVSSALTNPKFQRFEAFISPLIHRRGDSMSKLSLSSSSLKEVDGSSKKSLLPKSLSAKGDKKDHRSSRSLEEALVSSSPIEGLRKSRSISVRTE QKGSGTDHDQEKKLVEKGTVASPARHKFLRRQSTSGPLRSSWKKLTPRMNGDKSENRKPILSTLKEDHHQHPNNLKKLEAEETKDEKGSSDEKAPNSTEV MKSSSLVSQAKHEATSKNTKSSSSSTKKRFIKRAQNVPQSPLFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034718 [exp]	0	1
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005551 [exp]	1.0	0.9404
AT4G09940			P-loop containing nucleoside t...		Lus10028023 [exp]	10.6	0.7777
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10043310 [exp]	11.1	0.8833
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10042849 [exp]	12.5	0.8640
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010943 [exp]	12.6	0.8551
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10029900 [exp]	13.6	0.8525
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	14.2	0.8805
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	15.9	0.8549
					Lus10014101 [exp]	15.9	0.8450
					Lus10003693 [exp]	17.3	0.7859

Compare expression of checked genes

Lus10034718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.