Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02955 371 / 2e-121 MEE12 maternal effect embryo arrest 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021646 [exp] 901 / 0 AT2G02955 442 / 4e-147 maternal effect embryo arrest 12 (.1) Lus10016252 [exp] 244 / 4e-78 AT2G02955 148 / 2e-41 maternal effect embryo arrest 12 (.1) Lus10004454 [exp] 188 / 9e-55 AT2G02955 204 / 8e-60 maternal effect embryo arrest 12 (.1) Lus10030475 [exp] 177 / 5e-54 AT2G02955 109 / 3e-29 maternal effect embryo arrest 12 (.1) Lus10016251 [exp] 168 / 2e-50 AT2G02955 114 / 6e-31 maternal effect embryo arrest 12 (.1) Lus10030476 [exp] 123 / 4e-31 AT2G02955 79 / 5e-16 maternal effect embryo arrest 12 (.1) Lus10012828 [exp] 100 / 2e-24 AT2G02955 68 / 8e-14 maternal effect embryo arrest 12 (.1) Lus10016253 [exp] 82 / 1e-18 AT2G02955 63 / 8e-13 maternal effect embryo arrest 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169500 [exp] 343 / 5e-110 AT2G02955 513 / 5e-174 maternal effect embryo arrest 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034719 pacid=23162714 polypeptide=Lus10034719 locus=Lus10034719.g ID=Lus10034719.BGIv1.0 annot-version=v1.0 ATGGAAAGTAACAAGGCCATCACGCCGAAGAAGGAGCGGGGTAGTAGTTACGGCTGTACCGATTTGGACCTGACTGGCCCGACGGAGCCGGCGGATTTCG GCGCGGCGGCGACCGGGAAGCTAGAGTATGATGATTACTATAACGAGGTTAGGATTAGGTATGTTATGGGGCTTCAGTGGATGGTTCAGATGCAGTGCGA TGCGTTGGTTGAGGAGTTTGGAGAACATGATGGCAGTAAGGTCCGGCGCAAGCACAGGAATGAACCGCATAATGCATTTGGCCAACGTGCAGTAATGGTT TGGTTTAGGAGTTTGAGGAAACAGATACCTCTAGATTATTCTCTGGCTATATGTTTCTTGGCTTGCCATATTGCAAGAGAAGCAGTTCTACCGACGGACA TTGTGAAGTGGTCAATTGAAGGGAAGATTCCCTATTTTGCTGCTCACATTGAAATCGATAAGCGTTTTGAAGGTCCCTCGCTTGCCTGTCCATTAAGCTC AGCACTAATGTTTAGGCCATTGCAGCCAATACCAGTCCAGAAGTTAGAAGCAATGGCTGGTATTATAGCTGGGTCGGTGGGTTTGCATCTACCTCCAGTA AACTTCCATGCAGTAGTGTCTCGGTTTCTCAGTGATCTGTCTCTTCCTAGTGATAAGATTCTTCAACATGCTTGCCGCATACATGAATGGTCAATGCCTC CTGATTTATGGTTATCATCAAATGAGCTAAGGCTTCCGTCTCGTGTATGTGTGATGTCGATACTGATGGTAGGGATTAGAATTCTCTATAACTTGCATGG CTTTGGATATAGCAAGATTGGAGGACCATGTGAGTTTGCCAAAGACTTGACATCGTATCTCCAGTACTGTAAAGACGTGGTATTTGAAGGAAGTGGGTCG TCTTCTCAGAAAGCTCTGTCCGAAGGTGAAGAAGAAACGATAGAGAAGCTGTGGGATTATTATCAGATTTCAGAGGATTGTGAGCCTGTAGATGAACTGC TTGGAGAAAAAGATGTCACATTGAACCAAAAACGATCAGGGAGCGTACAAAATCACAGCCCAACTGTGTCAGGATCGATACAATCCAGAGACACGTCCAA CAACAACAACACCATTCGTGAACGGCCACCCCACACTCGCCCTGCAGCAGACCCTCCGAAAGAAGCCAACTCCAAGATCAGAAGAATGAAGATGGACATG GAGGAGAACCGGTTCTGCTACATCCCACCAAGGGTCAACGTGAAACGATCCGAAGGATACCTCTACTACAACAGGAAGCAGGACGATGGCTCATACAGGT ACGCCGCTCACGCGGACTACTACATCCTGTTGCGGTCCTGCGCGAAGGTTGCCCAGGTCGATATCAGGATCATGCACATTGGAGTGCTGGGTTTGGAGAG GAGGTTGGCTTGGTTGGAGAAGAGGATTAAACATTGCTTGCATTTGAATCCTCCTAGTTTTACTTGTGACTTCTGTAGAGATGATGATAATACAGCTTCT AAGTTGGATGATCTTGGAACAACACTCACACCAAAGATGAAGCTTTGA
AA sequence Show only first row Show all	>Lus10034719 pacid=23162714 polypeptide=Lus10034719 locus=Lus10034719.g ID=Lus10034719.BGIv1.0 annot-version=v1.0 MESNKAITPKKERGSSYGCTDLDLTGPTEPADFGAAATGKLEYDDYYNEVRIRYVMGLQWMVQMQCDALVEEFGEHDGSKVRRKHRNEPHNAFGQRAVMV WFRSLRKQIPLDYSLAICFLACHIAREAVLPTDIVKWSIEGKIPYFAAHIEIDKRFEGPSLACPLSSALMFRPLQPIPVQKLEAMAGIIAGSVGLHLPPV NFHAVVSRFLSDLSLPSDKILQHACRIHEWSMPPDLWLSSNELRLPSRVCVMSILMVGIRILYNLHGFGYSKIGGPCEFAKDLTSYLQYCKDVVFEGSGS SSQKALSEGEEETIEKLWDYYQISEDCEPVDELLGEKDVTLNQKRSGSVQNHSPTVSGSIQSRDTSNNNNTIRERPPHTRPAADPPKEANSKIRRMKMDM EENRFCYIPPRVNVKRSEGYLYYNRKQDDGSYRYAAHADYYILLRSCAKVAQVDIRIMHIGVLGLERRLAWLEKRIKHCLHLNPPSFTCDFCRDDDNTAS KLDDLGTTLTPKMKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10034719 [exp]	0	1
AT1G55880			Pyridoxal-5'-phosphate-depende...		Lus10043164 [exp]	3.9	0.6741
AT1G55040			zinc finger (Ran-binding) fami...		Lus10031502 [exp]	4.0	0.6926
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10018508 [exp]	19.2	0.5660
AT5G18475			Pentatricopeptide repeat (PPR)...		Lus10005540 [exp]	20.7	0.6913
AT1G04230			Protein of unknown function (D...		Lus10039489 [exp]	28.3	0.6697
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017663 [exp]	44.2	0.5316
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10042721 [exp]	50.9	0.5943
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	51.1	0.6333
AT5G22480			ZPR1 zinc-finger domain protei...		Lus10015454 [exp]	51.4	0.6044
AT1G79050			recA DNA recombination family ...		Lus10042462 [exp]	60.0	0.6120

Compare expression of checked genes

Lus10034719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.