Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37230 1012 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02060 360 / 2e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G30290 211 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 195 / 7e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 191 / 3e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 190 / 9e-51 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 188 / 7e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G74580 186 / 1e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G17140 187 / 2e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 178 / 2e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021645 [exp] 1472 / 0 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017658 [exp] 380 / 5e-121 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005303 [exp] 202 / 1e-54 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 201 / 3e-54 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 191 / 7e-51 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 189 / 3e-50 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 188 / 6e-50 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 182 / 2e-48 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10008650 [exp] 181 / 2e-47 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077400 [exp] 1076 / 0 AT2G37230 1050 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G056400 [exp] 387 / 1e-123 AT1G02060 885 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 211 / 6e-57 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 203 / 2e-55 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 197 / 5e-54 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G205600 [exp] 200 / 8e-54 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 196 / 3e-53 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G082300 [exp] 197 / 5e-53 AT1G30290 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 195 / 9e-53 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 195 / 3e-52 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034721 pacid=23162708 polypeptide=Lus10034721 locus=Lus10034721.g ID=Lus10034721.BGIv1.0 annot-version=v1.0 ATGGCCGGAATCACCGTCGCTAAGTCTTGTCGGCTGAAGACAAGGCTATATCCAACTCCTCTCACCACCATCTCCCGTTATAATTATTGCACCGCCGTAG CTGCGGATGTAATCCCACCCGCTGATCCTGCTCTACTAACCTCCGTGGATCCTCCATCACCGGATGTGCCCAAACCTCAGCCGAATCATGAATCTTTCTC CAATGATCCGGTCCGAGAGGCTCCTGCCAGAGTCCTACGAGGTACGCGTCCAAAACCGTCTGAGAAAATAGAGGATGTGATCTGCAGAATGATGGCGAAC CGTGCCTGGACGACCCGATTGCAGAACTCGATCAGGACGTTAGTGCCCGAGTTCGATCACTCTCTGGTTTACAACGTGTTGCACGGAGCTCGAAACTCAG AGCACGCGCTCCAGTTCTTCAGGTGGGTTGAGCGTTCGGGTTTACTCAAGCACGACCGTGAGGCTCATGTGAAGATTATTCAGATCCTTGGGAGGGCATC CAAGCTCAACCATGCTCGCTGCATTCTGTTGGATATGCCTAAGAAGGGCGTTGAGTGGGATGAGGATATGTTTGTGCTTATGATCGACAGTTATGGTAAA GGTGGGATTGTTCAGGAGGCAGTTAAGATGTTTGATAAAATGTCTGAGTTGGGCGTCAAGAGGAGTATTAAAAGTTACGATACTTTGTTCAAGGTGATCT TCAGGAGGGGGAGGTATATGATGGCCAAAAGGTATTTTAACAAGATGTTGAATGAAGGGATTGAACCAACTAGGCATACATATAACATCATGCTTTGGGG GTTTTTCTTGTCGATGAAGTGGGATACGGCCATGAGATTCTACGAGGATATGAACAGCAGAGGGATTTCTCCTGATGTGGTCACTTACAATACTATGATT CATGGATACTCCAGGTTTAAGAAAATGGAGGAGGCAGATAAGGTTTTTGTGGAAATGAAAGGGAGGAATATTGCTCCTACTGTGATCAGCTACACCACTA TGGTGAAAGGGTATGTGGCTGTTGAGAGAGTTGATGATGCATTGAAGTTGCTTGAGGAGATGAAGTCGTTTGGTATCAAGCCCAATGCTGTGACTTATTC TACTTTGTTGCCAGGGCTTTGTAGTGCTGGAAAAATGGTGGAGGCTAGAGATGTTTTGAAGGAGATGGTGGCAAGGCACCTTGCTCCGAAAGATAACTCG ATTTTTATCAAGTTGATTGCTAAGCAATGTAAAGCTGGAGACCTAAATGCTGCTGTTGATGTCCTCAAGGGAATGATCGGGTTGAGCATACCAACAGAGG CGGGGCATTATGGTGTGTTGATAAAGAACTTGTGCAAGGCCGGAGAGTATGATAGGGCGGTGAAGTTGTTGGACAAGCTTATTGAGAAGGAAATCATTTT GAGGCCTCAGAGTACTTTAGAAATGGAAGACAGTGCTTATAATCCGATCATTCAGTATCTATGTGGCAATGGACATACGAAGAAGGCAGAAACTTTGTTC AGGCAGTTGATGAAGAAGGGTGTGCAGGATCCGATTGCCTTCAATAATTTAATATGCGGGCATGCAAAAGAAGGATTTCCTGATTCTGCTTTTGAGATTC TAAAGATAATGGGCCGGAGAGGTGTCCCCCGAAATTCAGAAGCTTATGGATTGCTGATCGAGAGTTATTTGAGGAAAGGCGAGCCTTCTGATGCCAAGAC AGCACTGGACAGTATGATTGAAGAAGGGCATGTTCCAGATTCATCTATATTCAGGTCAGTGATGCAGAGCTTGTTCGAGGATGGAAGAGTTCAAACTGCA AGCCGTGTGATGAAGAGTATGTTAGAGAAGGGTGTGAATGAGAACATGGATCTGGTTGACCAGATAGTTGAAGCCCTCCTCCTTAGAGGTCACGTCGAAG AAGCCCTTGGACGTGTCGAGTTACTGGTTCACAGTGGATGTGCTGTGAACATCGATCATCTCTTGTCGATTCTGTGCGAGAAGAACAAGACCATTGGTGC TAACAAGTTGCTAGATTTCGCACTGGAGAGAGACGTTCAGCTGGACTTCAAAAGCTACGACAAGGTGTTGGATGCACTCCTCGAAGCAGGGAAGACCCTG AATGCTTATTCGTTGCTATGTAAGATGATGGAGAAAGGCGGAGTTACTAATTGGAGTGGCTGCCAGGATTTGATTGACAGTCTTAACAGGGAAGGGATGA CGAAGCAAGCTGATATCCTGTCGAGAGCTCTCAAGGGAGGGGAGAAGAAACCACATGCGACCAACAAAGAGAAGAACAAGAAGAAAATGTCGGCTGCTGC TTGA
AA sequence Show only first row Show all	>Lus10034721 pacid=23162708 polypeptide=Lus10034721 locus=Lus10034721.g ID=Lus10034721.BGIv1.0 annot-version=v1.0 MAGITVAKSCRLKTRLYPTPLTTISRYNYCTAVAADVIPPADPALLTSVDPPSPDVPKPQPNHESFSNDPVREAPARVLRGTRPKPSEKIEDVICRMMAN RAWTTRLQNSIRTLVPEFDHSLVYNVLHGARNSEHALQFFRWVERSGLLKHDREAHVKIIQILGRASKLNHARCILLDMPKKGVEWDEDMFVLMIDSYGK GGIVQEAVKMFDKMSELGVKRSIKSYDTLFKVIFRRGRYMMAKRYFNKMLNEGIEPTRHTYNIMLWGFFLSMKWDTAMRFYEDMNSRGISPDVVTYNTMI HGYSRFKKMEEADKVFVEMKGRNIAPTVISYTTMVKGYVAVERVDDALKLLEEMKSFGIKPNAVTYSTLLPGLCSAGKMVEARDVLKEMVARHLAPKDNS IFIKLIAKQCKAGDLNAAVDVLKGMIGLSIPTEAGHYGVLIKNLCKAGEYDRAVKLLDKLIEKEIILRPQSTLEMEDSAYNPIIQYLCGNGHTKKAETLF RQLMKKGVQDPIAFNNLICGHAKEGFPDSAFEILKIMGRRGVPRNSEAYGLLIESYLRKGEPSDAKTALDSMIEEGHVPDSSIFRSVMQSLFEDGRVQTA SRVMKSMLEKGVNENMDLVDQIVEALLLRGHVEEALGRVELLVHSGCAVNIDHLLSILCEKNKTIGANKLLDFALERDVQLDFKSYDKVLDALLEAGKTL NAYSLLCKMMEKGGVTNWSGCQDLIDSLNREGMTKQADILSRALKGGEKKPHATNKEKNKKKMSAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10034721 [exp]	0	1
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	2.4	0.9554
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10020055 [exp]	6.0	0.9512
AT5G12260			unknown protein		Lus10036072 [exp]	7.4	0.8996
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10035298 [exp]	7.5	0.9320
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	8.9	0.9333
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	10.1	0.9502
AT3G18790			unknown protein		Lus10023225 [exp]	10.1	0.9033
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	10.6	0.9356
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10011317 [exp]	11.6	0.9316
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10026151 [exp]	15.1	0.9223

Compare expression of checked genes

Lus10034721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.