Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69360 102 / 9e-22 Plant protein of unknown function (DUF863) (.1) AT1G13940 96 / 6e-20 Plant protein of unknown function (DUF863) (.1) AT1G26620 81 / 4e-15 Plant protein of unknown function (DUF863) (.1) AT5G61300 47 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021644 [exp] 1608 / 0 AT1G13940 105 / 5e-23 Plant protein of unknown function (DUF863) (.1) Lus10036807 [exp] 72 / 2e-12 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10030419 [exp] 72 / 2e-12 AT1G13940 397 / 1e-121 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 71 / 3e-12 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10026640 [exp] 50 / 1e-05 AT1G13940 323 / 7e-96 Plant protein of unknown function (DUF863) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092800 [exp] 71 / 3e-12 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 64 / 6e-10 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.004G125900 [exp] 62 / 3e-09 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 60 / 1e-08 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.018G020800 [exp] 48 / 3e-05 AT1G69360 54 / 2e-07 Plant protein of unknown function (DUF863) (.1) Potri.006G262600 [exp] 45 / 0.0002 AT1G13940 53 / 4e-07 Plant protein of unknown function (DUF863) (.1) Potri.001G121200 [exp] 45 / 0.0003 AT1G62530 106 / 5e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.003G112000 [exp] 44 / 0.0006 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05904 [flax] [poplar] DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence Show only first row Show all	>Lus10034722 pacid=23162731 polypeptide=Lus10034722 locus=Lus10034722.g ID=Lus10034722.BGIv1.0 annot-version=v1.0 ATGGCAATGCTGGAAATGCAAGCAGATACGCAACAGCAGCAGCAGCAGCAGTATAGCTATTTCTCTGGACATTATCCGACAAGGGATCCTGGCTTGAGTG GTGACAACATCAACATCTGGCCTCCTAGAAGTGGCAATGATGCCATTGTCTGGCCTCCGAGAAGCATCAATGACATCAACTCCATGCGGAATGCCCAACT GTACAATGGTAGCATCATACGGAATGATCAATCCCACAATGGAAGTTTCATACAGAATGGAGAACCGAACAATCACAATGTCGTACGGAATGGTCAACCT CACAATGACAGTTTCATACAGAATGGAGAACTGAACAATCACAATGTCGTACGGAATGGACAACCGTACCGTGAGAGTGTGGTAAGGAATGGACAACCGA ACTATGACAATGTCGTAAGGAATGGACAACAGTACAATTGCTTCCTGGAATCACCTTATCCGAATCAGCATTCAGTGTACCAGGAAATGGTGAGGCAGAC AATGCTTGGCCAAGAAGCTATGTCCAATAGTCATATGGTGCTGCGGTCTCCTGGCCACCAGCATTTGGTTTTTAAGGAAATGGTGAAACAAACAATGCTT CAACAAGAGTCTATATTCAAGGACCAGGTCCATTCTCTCCACTGCGTGTACAACAGACATCGAGAAATGCTTAATGAAATGAGATCGAGGCAGTTGAATA CTCACCATTCACAGCTGGAATTGTTGCGGTTGAATCCTATCCTGTCTCGGTTTTCTTGTGAGCGAGAAAAGACATGCCAAGTTGCTGCAGTGCCTTGGTT GACTGGTGCGGTCAGTCAATTATCTGTTTCACCCGTTCAGAACAACCTAATTGACTTGAATTACAGTGACTGTGAGGTGAGCAACAATCTGTGTCATCAT CCTATTCTAGCTGAGCGTCATGCCAACGAGGCTCTCGTGTTGGAGTCCAAGTTTAAAAGGTACGGCAAAAAGATATTAGATCTTGAGCGTCCAGCTGAGG AGTATATTGATGGAGAAGATGGAATACCTTTATTAGCAGTAAAAGTCGAAGGCCTTCCAGAGGAAAGTTCTCGATGTATTCTGAAGAGTGATACTGAATC GTCATTTGGCATTATGGATCTCAATTTGGAATACCAGGAGGATGACACGTTTCAGGCATTTCCAGTGAAATCTGAATGCCTAGCTGACTTGAACGAACTT GCTCAGCTGGAGGACGAAGCACTTCCTGACTCCGACGGCATGCTTAAACAGCCTCTTGAACTTCCAGCTGATGGATCTTTGCATAATGAAAATACGGTAT CTGTTGGATTGAAACTGTCTGTAGATGTGTTGAATGGAGATAGGGAACCTTGTATGGGTATTGGTGACCTCAACTGTACTTTCCAGGAAGATAATGTGTT TGACGACTCAAAAACTGGGCAATCTCACGAGTTAGCTGACTTGAGTGAACCTTCCAAGTCTGAAAAAGATACTGACCCCAAGTCCAATGCAGTTCTAAGT TCCAATCCAGGCGAAGAAATCGTGGATCAGCTGGGGAAAGTGGATAACGTTCAAGATGACTCACCAGAGCTGTCGGATAAAGAAGGGAGTAATGAGAGTT GCTCAAGTGCCTTAGATGAGGACCAGAGCGAAAGTGAGGAGGAGTTGCCATTCAACAATGACGCGGCAGGGGAAAATAGCAGGGACACAAACTCTTTGTC TGGGGAAATCACCTCCACATTATCTGAGAACACCGAGCAAGTGGAACAAGTTACATTAGCCCAAAAGGTCGTGCGAAGAAGTGGAAGATTGAGGTGGGAA AGGCTAGCCTCTATTATCCCCACAGCCAATAAACATACTTCAGCCAAGCGTATTCGTTGTGATTGGACGTTCCCAGAAATAGTACAAGCACTTCCATGTG AGAAATCTCACTTGTATTCCAGAGAAATGACCAAGCGTAGGCACCGTGCAATCACTGGTTGCAAGTCTGGATGTGATAAAATTATCAAACACAGAAGGAA GAGAAGGTTAATATGCCATAGCAATGGCAGCAGTGATCATGAATTTGAAGATGAGCAGGGTGGCTGTAGAAAGAGCATGAAAATAGACATCAATCCTAGT GATTCTCAAGATGTGCATTCCATGCTAACTGCGAACGAGCCTAATGACAAGGCATTTCCGAGCCTTTGCATTAACACGAACTCTCGCGGAAATGAAGATG AGTCTGCATCAACACCCTCCTCTCTGTCAAGAGAAGTACATTTGGTGGCACCTCAAGGTTTGGAAAGCACGGAGACTTCTCAGGTAATAGGAGAACCGAA AGAAAACCTGCTTGATATGTTGGTGGAACCAGTCAGGGCTGCTGCAGAGGCCCTAGTATCTATCTCGTCACAAGTCCCAGCATGCAGTGAAGGTGTTGTT GCGTCCAGCTCATCGGAAATCTTGAATGTCGAGTCTCTCTATTGTTTGGCAAGCGTAGCTGCTTCTGCGACAGATGATCCAGAGGCTAATTATGGCCTTT CTTTGAGTAGGGGCGGTGCTGGTCTTGTATCTTGCGAGATTGACTACTTTGAAGCAATGACATTGAAACTGCCAGAAATAGAGGGGGAGGAGTATCATTA CAGTGATGTCAACAACCAAATGGAGGAGGGGGAGCCATCCTTATTAGTAGATTCACCAATTCAAGAACCGCGAAAGGGCACGACAAAAAGGGGCAAGCTG CAGAAGAGGGATTTCCAAAGTGAAGTTCTTCCGGGTTTGGTCTCCTTGTCAAGGTATGAGGTGACTGAGGATCTTCAGGTGATAGGAAGCATACCGATGG CAGCTCGTTCTCGTAACAACACTGGTTTACGAAAGAAGAGGTTAAAGAATAGAGCTTCTGACTCTGCTTCAAACATGATGATCGATACTACTTCGTGTTC GATGGAACTCGGACCGAGTACGATGGACGAAGGGTGGGGAATAGACTGGGGGAAGGTTACAAGGCGGCGCAGAGGACAGAGGTGCAGAGTATCCTTTCTG GGTTTAACCTTTGGCAATAGGTACAGGCCATGGATGAACTAG
AA sequence Show only first row Show all	>Lus10034722 pacid=23162731 polypeptide=Lus10034722 locus=Lus10034722.g ID=Lus10034722.BGIv1.0 annot-version=v1.0 MAMLEMQADTQQQQQQQYSYFSGHYPTRDPGLSGDNINIWPPRSGNDAIVWPPRSINDINSMRNAQLYNGSIIRNDQSHNGSFIQNGEPNNHNVVRNGQP HNDSFIQNGELNNHNVVRNGQPYRESVVRNGQPNYDNVVRNGQQYNCFLESPYPNQHSVYQEMVRQTMLGQEAMSNSHMVLRSPGHQHLVFKEMVKQTML QQESIFKDQVHSLHCVYNRHREMLNEMRSRQLNTHHSQLELLRLNPILSRFSCEREKTCQVAAVPWLTGAVSQLSVSPVQNNLIDLNYSDCEVSNNLCHH PILAERHANEALVLESKFKRYGKKILDLERPAEEYIDGEDGIPLLAVKVEGLPEESSRCILKSDTESSFGIMDLNLEYQEDDTFQAFPVKSECLADLNEL AQLEDEALPDSDGMLKQPLELPADGSLHNENTVSVGLKLSVDVLNGDREPCMGIGDLNCTFQEDNVFDDSKTGQSHELADLSEPSKSEKDTDPKSNAVLS SNPGEEIVDQLGKVDNVQDDSPELSDKEGSNESCSSALDEDQSESEEELPFNNDAAGENSRDTNSLSGEITSTLSENTEQVEQVTLAQKVVRRSGRLRWE RLASIIPTANKHTSAKRIRCDWTFPEIVQALPCEKSHLYSREMTKRRHRAITGCKSGCDKIIKHRRKRRLICHSNGSSDHEFEDEQGGCRKSMKIDINPS DSQDVHSMLTANEPNDKAFPSLCINTNSRGNEDESASTPSSLSREVHLVAPQGLESTETSQVIGEPKENLLDMLVEPVRAAAEALVSISSQVPACSEGVV ASSSSEILNVESLYCLASVAASATDDPEANYGLSLSRGGAGLVSCEIDYFEAMTLKLPEIEGEEYHYSDVNNQMEEGEPSLLVDSPIQEPRKGTTKRGKL QKRDFQSEVLPGLVSLSRYEVTEDLQVIGSIPMAARSRNNTGLRKKRLKNRASDSASNMMIDTTSCSMELGPSTMDEGWGIDWGKVTRRRRGQRCRVSFL GLTFGNRYRPWMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13940			Plant protein of unknown funct...		Lus10034722 [exp]	0	1
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	2.6	0.8496
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	6.9	0.8335
AT5G47530			Auxin-responsive family protei...		Lus10001734 [exp]	11.8	0.7630
AT5G52530			dentin sialophosphoprotein-rel...		Lus10014955 [exp]	15.6	0.7811
AT5G59990			CCT motif family protein (.1.2...		Lus10028137 [exp]	18.8	0.7900
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	19.2	0.7999
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	22.1	0.7941
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10037164 [exp]	23.1	0.7684
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	28.3	0.7976
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10009213 [exp]	32.5	0.7395

Compare expression of checked genes

Lus10034722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.