Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17980 852 / 0 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT4G32850 714 / 0 PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), nPAP, PAP(IV), PAP(IV), PAP(IV), PAP poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase AT2G25850 712 / 0 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) AT3G06560 280 / 1e-84 PAPS3 poly(A) polymerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021643 [exp] 1373 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009011 [exp] 1012 / 0 AT1G17980 857 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009641 [exp] 964 / 0 AT1G17980 800 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10006029 [exp] 729 / 0 AT4G32850 911 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10006844 [exp] 696 / 0 AT4G32850 815 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10037589 [exp] 687 / 0 AT2G25850 818 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Lus10005490 [exp] 616 / 0 AT4G32850 769 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043200 [exp] 988 / 0 AT1G17980 871 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Potri.006G235400 [exp] 746 / 0 AT4G32850 909 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Potri.018G057200 [exp] 742 / 0 AT2G25850 920 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Potri.008G102500 [exp] 295 / 9e-91 AT3G06560 573 / 0.0 poly(A) polymerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04926 [flax] [poplar] PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain CL0260 [flax] [poplar] PF04928 [flax] [poplar] PAP_central Poly(A) polymerase central domain
Representative CDS sequence Show only first row Show all	>Lus10034723 pacid=23162862 polypeptide=Lus10034723 locus=Lus10034723.g ID=Lus10034723.BGIv1.0 annot-version=v1.0 ATGGAGACTTCAGCTTTAAGCACCCGACCTAACGGGCAGCAGCAGCAGCATCATCGGTTAGGCATTACAGATCCTATATCATTGGGGGGACCGTCAGAGT ATGATATGATCAAGACACGCGAACTCGAAAAGTATCTCCAAGACGTAGGATTGTATGAGACTAGGGAAGAAGCTGTTTCGAGAGAAGAAGTGCTTGGACG GCTAGATCAGATTGTCAAGCGTTGGGTGAAAGTTATTAGTCGCACCAAAGGGTTGAATGACCAACTGGTGCATGAAGCAAATGCAAAAATCTTCACGTTT GGTTCATACAGACTAGGGGTGCATAGCCCTGGTGCGGATATAGACACCCTTTGTGTTGCACCTAGTTACGCATCACGTGAGGAGGATTTCTTTGGAGAAT TACATAACATGCTGTTAGAAATACCAGAAGTGACGGAGGTGCATCCTGTCCCTGACGCTCATGTTCCTGTTATGGGATTCAAATTCAAGGGGGTTTCTAT AGATCTACTCTATGCAAAATTGGCGCTGTGGGTGATCCCTGAAGATCTTGATGTTTCACAAGATTCAATACTACAAAATACAGATGAGCAGACTGTTCGT AGTCTTAATGGTTGCAGGGTCACTGACCAGATATTGAGTCTTGTACCAAATATTCAGAACTTCCGAACAACATTGCGCTGCTTAAGGTTTTGGGCAAAAC GTCGTGGTGTATATTCAAATGTTTCTGGGTTTCTTGGTGGTATCAATTGGGCATTACTTGTTGCTCGTATCTGTCAATTGTATCCAAATGCACTTCCCAA TATGCTAGTGTCTCGATTCTTCAGAGTTTATACTCAGTGGCGATGGCCAAACCCAGTCCTGCTTTGTGCTATTGAGGAAAGGTCCCTTGGGCTTCAGGTT TGGGATCCGAGAAGAAACCACAAGGATAGATACCACCTGATGCCTATAATTACACCTGCTTATCCTTGCATGAATTCTAGCTACAATGTATCTACAAGCA CCTTGCGGATAATGTCAGGAGAGTTTCAGAGGGGAAGCGAAATATGTGAGGCTATGGAAGCAAACAAAGCAGACTGGGAGACCCTTTTTGAGCCATTTTC TTTCTTTGATGCATACAAGAACTATTTACAGATTGATATAGGTGCCGAAAATGAACACGACTTACGAAGCTGGAAAGGTTGGGTTGAATCTCGTCTCCGG ACACTAATGTTGAAGATTGAGAAGCAAACTTACAATATGCTTCAGTGTCACCCTCACCCCGGCGAATTCTCCGACAAATCTAAGCCTTTACACCATTGTT ACTTCATGGGCTTGCAACGTAAACAAGGAGTTCCTGTCAATGAAGGTGAACAATTTGATATAAGGGCAACAGTTGATGACTTCAAACGCACTGTGAACAT GTACACAATGTGGAAGCCTGGAATGGAAATCCAAGTCACCCATGTTAAACGAAGGAGTATACCGAGCTTTGTTTTCCCTGGTGGTGCTCGCCCTTCACGG CCATCTAGAACAACGTGGGATAGTCGGCGCAGTTTGGAAGCTAAAGCATTTGGCTCTTCTGCAGCTGACAAATCCTCTGAACACAAAGAAGGTACAGATG GATCAGATGATCGGAGTAAGAGAAAGCGTATTGATGATAATGGGGACAATAACTTGGGTGCCAAGTGCTTGGCTGCTGTATCTTCGTCAAGTGAAGTTCA TGAGGGTAGCCCTTCTGTTAGAGTTCATTCACATTCTAACGATTGTGACCACAAAAGTACATATGAGTTTGGGGAGTCTGGTAGGGAGAAACACACAATA GACAGCACAGGAAATTTAGAAGTCATTGATGATGTCCCTGCTAGAGATGGTGTTTCAAGTGGATCAGTAAGTTATACGCCGCCACAGAATGTTCTGGACA ACCTTGACAGATCAACTTCCAAGGAGGCAGAGAAAGTGGCGATTGAGACTATCTTGTCTGGTTCATATGGTAGTCATAACGCTTCACCACAAGAACTCGA AGAGCTTGAAGATAACTTTGTGTGTAAAAATGAGTACAAGGATTCAGTTGCCAGCGAGATAGATGGCCCATTGGACTGTTCACCTTCAAATATATGCAAC AGTGCTGTTCAGTCGATTTCTCCCTTTCCTAATGGCAGCTTGGATGAGCTTGAGTACCCTAATGAGTTCCTAGTTTCTCCATTTGAATCAAACAAGAAGC AGAAAAGATCAACGATAAGTGTGGCAGCTAGCTGTTCAGATAACCCATGTTTAGCTACCTTAGATTGCAAGTCTCATTCCTGCCGAACTCTTGGCACAAT CTTCAGTCGCGCCGGTGGTGCAGCGGAAGCCACTCATCCGGTTGAACTTTACGTCACTGGGGAAAACCAGTTAGCCCTATGGAGGGGTCACAGCAGGGTC TCTGCAGCTAAGCTAATTCCCAGGACCTGGGTTTCTTCAGCTACTCTGAAACTCTTAAATGGCAAAGGCCTTTCCCAGAAACAAACCTGTAGCCATAGTG AACCTCGGTTGCTGCTTCGCTACCTGCCGCTCTTTCAGAGTTTCGAGTGGTATCTTCTCCTGTACTGA
AA sequence Show only first row Show all	>Lus10034723 pacid=23162862 polypeptide=Lus10034723 locus=Lus10034723.g ID=Lus10034723.BGIv1.0 annot-version=v1.0 METSALSTRPNGQQQQHHRLGITDPISLGGPSEYDMIKTRELEKYLQDVGLYETREEAVSREEVLGRLDQIVKRWVKVISRTKGLNDQLVHEANAKIFTF GSYRLGVHSPGADIDTLCVAPSYASREEDFFGELHNMLLEIPEVTEVHPVPDAHVPVMGFKFKGVSIDLLYAKLALWVIPEDLDVSQDSILQNTDEQTVR SLNGCRVTDQILSLVPNIQNFRTTLRCLRFWAKRRGVYSNVSGFLGGINWALLVARICQLYPNALPNMLVSRFFRVYTQWRWPNPVLLCAIEERSLGLQV WDPRRNHKDRYHLMPIITPAYPCMNSSYNVSTSTLRIMSGEFQRGSEICEAMEANKADWETLFEPFSFFDAYKNYLQIDIGAENEHDLRSWKGWVESRLR TLMLKIEKQTYNMLQCHPHPGEFSDKSKPLHHCYFMGLQRKQGVPVNEGEQFDIRATVDDFKRTVNMYTMWKPGMEIQVTHVKRRSIPSFVFPGGARPSR PSRTTWDSRRSLEAKAFGSSAADKSSEHKEGTDGSDDRSKRKRIDDNGDNNLGAKCLAAVSSSSEVHEGSPSVRVHSHSNDCDHKSTYEFGESGREKHTI DSTGNLEVIDDVPARDGVSSGSVSYTPPQNVLDNLDRSTSKEAEKVAIETILSGSYGSHNASPQELEELEDNFVCKNEYKDSVASEIDGPLDCSPSNICN SAVQSISPFPNGSLDELEYPNEFLVSPFESNKKQKRSTISVAASCSDNPCLATLDCKSHSCRTLGTIFSRAGGAAEATHPVELYVTGENQLALWRGHSRV SAAKLIPRTWVSSATLKLLNGKGLSQKQTCSHSEPRLLLRYLPLFQSFEWYLLLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10034723 [exp]	0	1
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	7.0	0.7651
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10003203 [exp]	15.1	0.7316
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10007924 [exp]	19.1	0.6629
AT5G35840		PHYC	phytochrome C (.1)		Lus10012342 [exp]	21.6	0.7243
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10038095 [exp]	23.2	0.7527
AT4G24100			Protein kinase superfamily pro...		Lus10033230 [exp]	23.8	0.7741
AT4G24100			Protein kinase superfamily pro...		Lus10000878 [exp]	24.1	0.7745
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	24.3	0.7545
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	25.9	0.7024
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10000941 [exp]	26.4	0.7731

Compare expression of checked genes

Lus10034723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.