Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021643 [exp] 186 / 7e-52 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10003479 [exp] 93 / 1e-21 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061500 [exp] 117 / 2e-28 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10034724 pacid=23162832 polypeptide=Lus10034724 locus=Lus10034724.g ID=Lus10034724.BGIv1.0 annot-version=v1.0 ATGCAGTCTAAGGGCGAGATCGACACCAAACCCATCGAACCAGTTCAGGTTGCCCTCACCCTTTTCGAAGAGAAAGGTGACAATCAGAAAAAGTTCGCCA CCGCCTGGACCTTCGACACAAATTCCACCGCCGAGGCAATGGTTGTTAAAGAAAAGGACACAGAAGGGCTATTAAAAGAGTTAGCAAACTACAAAATTCA GCTTGAGGCCAAAGACTCGGAGCAAATGCAGCTCCTTCACAAGCTGGACTGCTACCAGAACTCAGTTGAGCAGCTCACTCTCCAGCTGCAGAATTCCGAG TCCGAGAAAGAGTTCTACATCCTCCAACACCAAGAGGCCACACTCCGCCTCAACGAGCTCGAGCCAAAGGCGAAAGAGCTCAGCGAGCAAGCAGCCGAGG CTACGAAGCTAAGGGAGCAGCTCTCCAACGTCCTACACGAGTTGAGATGCACGCAGGGTGAGATGCTCAGCATCCAAGCTGAGCATGCCACCCTGAAGGA CGAGAAGGTCAGGGCCATCTCGAGGGCCCTGGCTAACGAGTCCACTGCAGCTTCTGAGAAAGGGAGAGCCGAGGAGTTGATAAGGCAAGTCGGGGATACA CAGGTTGAGATGGCATTGATTAAATCCGAGCTCATCAAGACGAGATCGAAGCTCGCTGCAACCGAGGCTGCTGAAGCTAGAGCCAAGAAGCAAGGAAGCA AGGATAATAGGCATGTAACTTGGAATATTCCACATGATGTAGATCATGATTCTGAAGGAGGAGGAGGAGGGAAGATCATGATTCCGTTGGTGGATTACGA GGCGTTGGTGGAGAGAGCTTCGGCCTCTGCGAATAAGAACATAATGTGGAAGGACTACGATCAGTCTGCATCGGAGTTCAAAATCGAGATGGCGAATTTG AAGGAGGAGCTGGAAGGTGCTATGTCGAGAATCGGAGAGTTGAGGGCGAGAGCGGAGCAGGCCGCAATGAGGGCTGATGCTGCTGAGAAAGGTAAAGCTG AGGTTGAGGAGGAGCTCAGGAAACTCAAGGAGAGGAAGGAGAAGAGGATTGCAGCTCTTGCTGCTCGTAGGCAGGAATCTTTGCAGATCTTGCCTATGTA TGATGCTACTACTAAATCAGCTGAATCTTTTCAGCCATTGGGCAAGATTCTCAACCTCAGTTACTAG
AA sequence Show only first row Show all	>Lus10034724 pacid=23162832 polypeptide=Lus10034724 locus=Lus10034724.g ID=Lus10034724.BGIv1.0 annot-version=v1.0 MQSKGEIDTKPIEPVQVALTLFEEKGDNQKKFATAWTFDTNSTAEAMVVKEKDTEGLLKELANYKIQLEAKDSEQMQLLHKLDCYQNSVEQLTLQLQNSE SEKEFYILQHQEATLRLNELEPKAKELSEQAAEATKLREQLSNVLHELRCTQGEMLSIQAEHATLKDEKVRAISRALANESTAASEKGRAEELIRQVGDT QVEMALIKSELIKTRSKLAATEAAEARAKKQGSKDNRHVTWNIPHDVDHDSEGGGGGKIMIPLVDYEALVERASASANKNIMWKDYDQSASEFKIEMANL KEELEGAMSRIGELRARAEQAAMRADAAEKGKAEVEEELRKLKERKEKRIAALAARRQESLQILPMYDATTKSAESFQPLGKILNLSY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034724 [exp]	0	1
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	1.0	0.8821
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	3.2	0.8760
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	3.5	0.8474
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	5.5	0.8487
AT3G22640		PAP85	cupin family protein (.1)		Lus10042615 [exp]	7.4	0.8351
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	8.4	0.8239
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	8.5	0.7607
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	15.4	0.7756
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10031352 [exp]	16.6	0.7887
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	19.6	0.7801

Compare expression of checked genes

Lus10034724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.