Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18670 782 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G74330 764 / 0 Protein kinase superfamily protein (.1.2) AT5G39420 580 / 0 CDC2CAT CDC2C (.1) AT1G53050 551 / 0 Protein kinase superfamily protein (.1) AT1G54610 528 / 0 Protein kinase superfamily protein (.1.2.3) AT3G01085 527 / 0 Protein kinase superfamily protein (.1) AT1G09600 526 / 5e-179 Protein kinase superfamily protein (.1) AT5G44290 507 / 2e-172 Protein kinase superfamily protein (.1.2.3.4) AT1G71530 499 / 3e-169 Protein kinase superfamily protein (.1.2) AT1G33770 496 / 7e-169 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021642 [exp] 1181 / 0 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10015727 [exp] 939 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10025773 [exp] 548 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 548 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 546 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012805 [exp] 545 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 536 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 534 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 529 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061400 [exp] 901 / 0 AT1G18670 846 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.012G067800 [exp] 894 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.017G088200 [exp] 635 / 0 AT5G39420 647 / 0.0 CDC2C (.1) Potri.011G119400 [exp] 555 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 548 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 546 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G226900 [exp] 545 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 542 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 542 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 531 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034726 pacid=23162860 polypeptide=Lus10034726 locus=Lus10034726.g ID=Lus10034726.BGIv1.0 annot-version=v1.0 ATGGGTTGTGTCAGCTCCAAGCAGGCCGTCTCCGTCACGCCGGCTGCCCAAAACTCCGGCGAGACCAACTCTGGTCGGATACGGGTCGGCCCGGGAACGG AGGAGAAGGGCCAGGGGAATGATTTCAAGGAGAAGGATTTCGGCATTGGTGGCGGAAGAGAGTTGACCAAGTCTGGTCGAGGGAGCTCCAACGGGGATGT CTCGCTCAGTTTTAGGTTGAGGAATCTGCACAGGTACGTCGAAGGGGAGCAGGTCGCCGCCGGTTGGCCTGCCTGGCTTAGCGCCGTCGCGGGCGAAGCA ATTCATGGCTGGGTCCCCCTCAAAGCTGATGCCTTCCAGAAACTAGACAAGATAGGCCAAGGTACATATAGTAGCGTGTTTAGAGCAAGGGAGCTCGAGA CTGGGAGGATCGTCGCATTGAAGAAGGTCCGGTTCGACAATTTCGAGCTGGAGAGTGTGAGGTTTATGGCAAGGGAGATAGTGATTCTGCGCCGCCTTGA TCATCCCAATGTCATGAAGTTGGATGGACTGATTACATCACATTCATCCAGCAGCATATACTTGGTGTTTGAGTACATGGAACATGACATTACTGGTCTA CTTTCATGCCCTGATGTCACTTTTACTGAGTCACAGATCAAGTGCTTCATGAAACAGTTGTTGTCGGGGATTGAGCACTGCCACTCCATGGGAGTAATGC ATAGGGATATTAAAGGCTCCAACCTTCTTGTAAATAACCAAGGGATACTAAAAGTTGCAGACTTTGGCCTTGCAAACTTCTGCAGCGTTGGAAAGAATAG GGAGCCTCTAACTAGTCGAGTCGTTACGTTGTGGTATCGCCCACCGGAGCTTCTGCTGGGTTCGACCAGTTATGGAGCATCTGTTGATCTTTGGAGCGTT GGATGTGTGTTTGCTGAACTTCTCCGTGGGAAGCCCATCCTGCGAGGAAGAACTGAGGTTGAGCAGTTGCATAAGATTTTCAAGTTGTGTGGCTCCCCAC CTGATGAGTACTGGAAAAAGTCCAAGCTTCCTCATTCAACTCTATTCAAACCGCAACAACACTACGAAAGTTGCATTCTTGAGACATTTAAAGATATGCC AACTAGTGCAGTGAGTCTCATTGATACTCTACTTTCTGTGGAGCATTACAAGCGTGGATCTGCCTCATCCGCTCTTTCATCCCAGTATTTCACAACTGAG CCTCATGCTTGCGAACCAGCAAGCCTGCCGAAGTACCCTCCAAGCAAAGAAATCGATGCCAAGAATCGTGAGGAAGCTACAAGGAAGAAGACCAGTGGGA GGACAAGCCGTGGTGCTGAAACACGAAAGCCAGTACAACGTGGCCATCAGAACACCACAAGGCGACATGTAGATGCACGAAAACCGCCCCCTAAGAAATT AGATGATGAGTATGTTCATGATGTCAAGAACCAGCAAGGAGACATTTCCTTCTCTGGACCTATGCAAGTATCTAGTTCTAGTGGCTTCGCTTGGGCAAGA AGGCGAAGAGAAGATGCGACTCGTGTATCCCATAACGAGTCCATTCCGAAAGTCTGTGTTACTAGAGATGGACCTGAGCCTTCAGCTGCTATTGGTGAAA AGAACATGTTCGTGTCACAGCGACATGATTGTGGAGAACTTGATGGTGGGATGGGGCGTGACGTGTACGATATTTCGAAGAGTTCTTTGCAGGAGAAATG GAAGGAATTTGAACGTCCAGATTCCTTTTTTGATGCATCTGAGGATTACCATTCACAGGAACTGTCATTTGGTCATTACCAGAGAGAGGGACTGAAAACC AGGAGGACTAATTTGGGATTGCAGCATGAAGGAGACAAGGTTGAATTCTCTGGACCGCTGTTATCTCAGACGTCGCGAAGGGTGGACGAACTCTTGGAAA GACAAGAGCGCCACATTCAACAGGCGGTCCGGAAGTTATCATGGTTTCAAAGAGGTAAAAAAGATGGAAACTTTCTTTTAGAAAAAATTGATTGTTGA
AA sequence Show only first row Show all	>Lus10034726 pacid=23162860 polypeptide=Lus10034726 locus=Lus10034726.g ID=Lus10034726.BGIv1.0 annot-version=v1.0 MGCVSSKQAVSVTPAAQNSGETNSGRIRVGPGTEEKGQGNDFKEKDFGIGGGRELTKSGRGSSNGDVSLSFRLRNLHRYVEGEQVAAGWPAWLSAVAGEA IHGWVPLKADAFQKLDKIGQGTYSSVFRARELETGRIVALKKVRFDNFELESVRFMAREIVILRRLDHPNVMKLDGLITSHSSSSIYLVFEYMEHDITGL LSCPDVTFTESQIKCFMKQLLSGIEHCHSMGVMHRDIKGSNLLVNNQGILKVADFGLANFCSVGKNREPLTSRVVTLWYRPPELLLGSTSYGASVDLWSV GCVFAELLRGKPILRGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHSTLFKPQQHYESCILETFKDMPTSAVSLIDTLLSVEHYKRGSASSALSSQYFTTE PHACEPASLPKYPPSKEIDAKNREEATRKKTSGRTSRGAETRKPVQRGHQNTTRRHVDARKPPPKKLDDEYVHDVKNQQGDISFSGPMQVSSSSGFAWAR RRREDATRVSHNESIPKVCVTRDGPEPSAAIGEKNMFVSQRHDCGELDGGMGRDVYDISKSSLQEKWKEFERPDSFFDASEDYHSQELSFGHYQREGLKT RRTNLGLQHEGDKVEFSGPLLSQTSRRVDELLERQERHIQQAVRKLSWFQRGKKDGNFLLEKIDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10034726 [exp]	0	1
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030718 [exp]	3.7	0.7151
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030995 [exp]	7.7	0.7248
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10018849 [exp]	18.2	0.6352
AT4G24110			unknown protein		Lus10017328 [exp]	23.0	0.6978
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	28.3	0.6690
AT2G23140			RING/U-box superfamily protein...		Lus10011516 [exp]	30.3	0.6842
AT5G62070		IQD23	IQ-domain 23 (.1)		Lus10027435 [exp]	31.2	0.5993
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10019077 [exp]	31.5	0.6405
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	33.0	0.6944
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Lus10040780 [exp]	34.1	0.6251

Compare expression of checked genes

Lus10034726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.