Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31850 991 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 984 / 0 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G10440 533 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 523 / 7e-180 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 511 / 2e-175 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 509 / 1e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 498 / 1e-170 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 489 / 5e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 476 / 1e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00740 475 / 1e-161 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033277 [exp] 1215 / 0 AT1G31850 965 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10005764 [exp] 545 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 524 / 1e-180 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 522 / 7e-180 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 513 / 6e-176 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037180 [exp] 503 / 3e-172 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10017357 [exp] 500 / 4e-171 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 500 / 5e-171 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030479 [exp] 499 / 9e-171 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G131400 [exp] 1083 / 0 AT1G31850 1026 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G102400 [exp] 1063 / 0 AT1G31850 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.015G139000 [exp] 538 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 535 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 535 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 523 / 4e-180 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 521 / 2e-179 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 515 / 3e-177 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 513 / 3e-176 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 501 / 1e-171 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034729 pacid=23142199 polypeptide=Lus10034729 locus=Lus10034729.g ID=Lus10034729.BGIv1.0 annot-version=v1.0 ATGAAGCATCACAAAGATGGGAAACCGGGATCCCCATACGATAGAAGTCCAAGGCTTGTTCCCATGGCCCTAACATGTGTGGTGCTTTGTGGACTCTCCT TCTACCTTGGTGGAATCTTCTTTTCTGAGAAAAACCAGATTGAGGCCAATAATGTGAAGGTTGCAACAATTGCATCACCTAAGGAAGCAGCCATTACGCC TCTTGAAGTCAAATCTTCGACTTTCGGGGAATGCAGTGCTGACTATCAAGATTACACTCCGTGTACAGATCCAAAGAGATGGAAGAAGTATGGTGTCCAC CGCCTTACCTTCATGGAGAGGCATTGCCCACCAGCATTTGAGAGGAAGGAGTGCTTAATTCCACCTCCTGATGGGTATAAGTCACCAATTAAGTGGCCCA AGAGCAGGGATCAATGTTGGTACAGGAATGTGCCATATGACTGGATCAACAAGCAGAAATCAAATCAGCATTGGCTGATAAAGGAAGGTGATAAGTTCCT TTTCCCTGGAGGAGGTACTATGTTCCCCAACGGTGTGGGTGAGTATGTTGACCACATGGTTGAGCTGATCCCAGAAATGAAGGATGGAACTATTCGGACC GCCATTGATACCGGTTGTGGGGTTGCTAGCTGGGGAGGTGATTTATTAGATCGTGGCATCTTAACTCTTTCTCTTGCTCCAAGAGACAATCACGAGGCTC AAGTACAGTTTGCTCTGGAACGTGGAATCCCTGCCATTCTTGGCATCATTTCTACACAACGTCTTCCCTTCCCTTCTAATTCTTTTGACATGGCACATTG CTCCAGATGCCTTATCCCATGGACTGAATTCGGGGGAGTCTATCTCTTAGAAGTTCACCGCATCCTACGTCCTGGAGGCTTCTGGGTGCTCTCTGGTCCT CCGGTTAACTATGAAAACCGTTGGAGAGGGTGGAACACAACAATTGAGGAGCAGAAGTCAGATTTCGAGAAGTTGCAGGACTTGCTAACTTCAATGTGCT TCAAATTGTACAATAAGAAGGGTGATATTGCTGTGTGGCAGAAGGGTTCTGATGACTCTTGCTATAAGAAGCTTGCTAATCCTGATGTATATCCACCCAA GTGTGATGACAGCATCGAACCAGATTCTGCTTGGTACACCCCACTCCGACCCTGTGTTGTAGCTCCGGGGCCGAAGATCAAGAAGTCGGTTCTTGAATCG ATCCCCAAATGGCCAGAGCGGTTGCAAGTTGCATCTGAGCGCATCTCAGATGTTCCTGGTGGGAGTGCTGCAACTTTCAAACATGACAATGGCAAATGGA AGGTGCGGGCTAAGCACTACAAGAAGTTGCTTCCTGCAATTGGTACAGACAAGATTAGGAATGTGATGGACATGAACACAGTTTATGGAGGGTTTGCAGC AGCTTTCGTCGACAGTCCTCTATGGGTCATGAACGTCGTATCTTCTTATGCCCCGAATACACTTCCAGTGATCTACGACAGAGGGCTCATTGGCACTTAC CACGATTGGTGCGAGGCATTCTCAACATATCCCAGGACCTACGATCTTCTCCACGTTGATGGCCTCTTCACTGCCGAAAGCCAAAGGTGTGAGATGAAGC ATGTGTTGCTGGAGATGGATAGGATAGTGCGGCCGATGGGCTACGCAATGATCAGGGAATCGACCTACTACATAGATGCGATTGCAACGATTGCGAAGGG GATGAAATGGAGTTGCAGAAAGGAAGACACAGAGTACGGAATCGAGAAGGAGAAGATATTGGTGTGCCAGAAGAAGCTCTGGTATTCCTCAAACCAGAGT TGA
AA sequence Show only first row Show all	>Lus10034729 pacid=23142199 polypeptide=Lus10034729 locus=Lus10034729.g ID=Lus10034729.BGIv1.0 annot-version=v1.0 MKHHKDGKPGSPYDRSPRLVPMALTCVVLCGLSFYLGGIFFSEKNQIEANNVKVATIASPKEAAITPLEVKSSTFGECSADYQDYTPCTDPKRWKKYGVH RLTFMERHCPPAFERKECLIPPPDGYKSPIKWPKSRDQCWYRNVPYDWINKQKSNQHWLIKEGDKFLFPGGGTMFPNGVGEYVDHMVELIPEMKDGTIRT AIDTGCGVASWGGDLLDRGILTLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLSGP PVNYENRWRGWNTTIEEQKSDFEKLQDLLTSMCFKLYNKKGDIAVWQKGSDDSCYKKLANPDVYPPKCDDSIEPDSAWYTPLRPCVVAPGPKIKKSVLES IPKWPERLQVASERISDVPGGSAATFKHDNGKWKVRAKHYKKLLPAIGTDKIRNVMDMNTVYGGFAAAFVDSPLWVMNVVSSYAPNTLPVIYDRGLIGTY HDWCEAFSTYPRTYDLLHVDGLFTAESQRCEMKHVLLEMDRIVRPMGYAMIRESTYYIDAIATIAKGMKWSCRKEDTEYGIEKEKILVCQKKLWYSSNQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	0	1
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10038911 [exp]	2.0	0.8537
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	2.8	0.8424
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	5.4	0.8571
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	5.5	0.8390
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10011524 [exp]	6.0	0.8432
AT2G19770		PRF5	profilin 5 (.1)		Lus10006846 [exp]	8.4	0.7793
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	8.8	0.7914
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	9.9	0.7986
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	10.4	0.8310
AT5G65470			O-fucosyltransferase family pr...		Lus10002653 [exp]	11.2	0.7680

Compare expression of checked genes

Lus10034729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.