Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45900 260 / 1e-82 Ribonuclease P protein subunit P38-related (.1) AT5G53020 77 / 6e-15 Ribonuclease P protein subunit P38-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033275 [exp] 701 / 0 AT3G45900 268 / 2e-85 Ribonuclease P protein subunit P38-related (.1) Lus10018117 [exp] 89 / 2e-18 AT5G53020 410 / 4e-133 Ribonuclease P protein subunit P38-related (.1) Lus10022396 [exp] 89 / 2e-18 AT5G53020 414 / 1e-134 Ribonuclease P protein subunit P38-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G130100 [exp] 450 / 3e-156 AT3G45900 281 / 8e-91 Ribonuclease P protein subunit P38-related (.1) Potri.012G016600 [exp] 80 / 1e-15 AT5G53020 464 / 8e-153 Ribonuclease P protein subunit P38-related (.1) Potri.015G012000 [exp] 77 / 1e-14 AT5G53020 379 / 6e-120 Ribonuclease P protein subunit P38-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034732 pacid=23142178 polypeptide=Lus10034732 locus=Lus10034732.g ID=Lus10034732.BGIv1.0 annot-version=v1.0 ATGGCAGACGAAGAACCCGAGCTCGCAGCAACTTCCACCGCAGAAGGAGCGGGAGGTGAGACGACCGACAACAATAGGCTTATGTCCTCCTACCTAGGCC TCAGCTTCTCAGTCTTTCTGGCCTTACTCCCGGCCAACGCCCTCACTCTGCTCCCGGCTCTCCAATCCCGCATCCGAGACCTCTCCCTGCGCCTATTCCA AGCCGAGGAGCAGCTCAAGCAGATGAAGTCCAGGCGGCACGAGGACTCCAAGGCCAACGCCAGAGTCGTCGAGATCTTTGCCGGGAATCGTAACGCGTGG CGCGCGGAGGAGAAGCGGCTCCTGCAGCAGATCGACGCCGCCAGCGAGGAGGCGGCGGTGCTGAGGGCGAGAATTCGAGATTTGGAGAAGGAGAAGGAAG AGTGGGGGGTTAGGGTCCATGATTTGGAGAGGGAGGTTGGGGAAAGAGAGGAGATGCTGGGGTTTATGTCCAGAAGCGCTGCTGCTGCTGCTGGTAATGG TGGTGGCAACGATTATTATGAGGAGGATGAGGGTAGGGTGGAGGAAGGAGGTGAAGTTGCGTTTGGTGATAATAATAGGCAGTGGTTTGCTTCTGAGGAT GAGTATTTGAACGGGAATGGAAATGGAAATTTCGTGTACGGCGGCTCCTTTCATCATCAGCATCAGCAACAGCAACAGCAGCAGGAGCTTCGTTATGGAG GCTTGGGTTCTGAATTTGCTGCTTCAGCTTCCAAATTTTGGCCTGAGGGAGCTAACAATCTATGGCAGCAGGATGGACAGCATGAATCTGTTGAATCACA CTATCACGCGAAACATTTTGTAGCAAGAAGGGAATCTCCTTGGAAAGTCGATGGTGATTCAACCGGGGTTTCTACCAAATTAAAATTGCTTGAACAAGAA CTCCTTAATCTGGAAAAGGTTGGAAAGGGTGATCTGCTTAAAGTTCCATCACTTCTCAGGAAGCAGACCAAGAGATATCAAGCTCTGGCCGGAAAGATTG ACGATCTCTGCAGAAGAATGCAAGCAAGTGATCCGTTTGAACCCGCACTGAGTCCGGAGTTTCGAACACAAAGGCAAACCGAGTTCTTGCTGGAAGCATT CCGGCTTCAGCAGCGTGCATCCGAGACGGCACAGAAGCTGATGGCTCTGCAGACAGAGATAGGGAAGAGCGGGGATGACGACTTAGGAAGCCATCAGCAG CAGTACACGAAACTGGCGATGAGAAGTTCGTTGAGCTCGATCAGAAACAACTTGAAAGAAGTTCAGAGGAACCTTGAGATCTGGTTGGCAAGAATCATTG GTGATCTGGAAGGGATTCTGGCAAGAGACGGGGTTTCGCGGGTGAGGGATTACTACACTTCTAGGTATCCTTTTAGTACTCAGTAA
AA sequence Show only first row Show all	>Lus10034732 pacid=23142178 polypeptide=Lus10034732 locus=Lus10034732.g ID=Lus10034732.BGIv1.0 annot-version=v1.0 MADEEPELAATSTAEGAGGETTDNNRLMSSYLGLSFSVFLALLPANALTLLPALQSRIRDLSLRLFQAEEQLKQMKSRRHEDSKANARVVEIFAGNRNAW RAEEKRLLQQIDAASEEAAVLRARIRDLEKEKEEWGVRVHDLEREVGEREEMLGFMSRSAAAAAGNGGGNDYYEEDEGRVEEGGEVAFGDNNRQWFASED EYLNGNGNGNFVYGGSFHHQHQQQQQQQELRYGGLGSEFAASASKFWPEGANNLWQQDGQHESVESHYHAKHFVARRESPWKVDGDSTGVSTKLKLLEQE LLNLEKVGKGDLLKVPSLLRKQTKRYQALAGKIDDLCRRMQASDPFEPALSPEFRTQRQTEFLLEAFRLQQRASETAQKLMALQTEIGKSGDDDLGSHQQ QYTKLAMRSSLSSIRNNLKEVQRNLEIWLARIIGDLEGILARDGVSRVRDYYTSRYPFSTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	0	1
AT2G26970			Polynucleotidyl transferase, r...		Lus10041292 [exp]	1.0	0.8927
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10010283 [exp]	1.7	0.8648
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	3.7	0.8448
AT4G20430			Subtilase family protein (.1.2...		Lus10008060 [exp]	3.7	0.8924
AT1G20830		MCD1	multiple chloroplast division ...		Lus10013209 [exp]	6.2	0.8359
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	8.1	0.8599
AT3G27390			unknown protein		Lus10014881 [exp]	11.3	0.8208
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	12.4	0.8586
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	15.6	0.8304
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	15.7	0.8596

Compare expression of checked genes

Lus10034732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.