Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09140 506 / 7e-168 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) AT4G02460 112 / 5e-25 PMS1 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) AT4G35520 91 / 2e-18 MLH3, ATMLH3 MUTL protein homolog 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033274 [exp] 712 / 0 AT4G09140 1066 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10030376 [exp] 117 / 2e-26 AT4G02460 963 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10007866 [exp] 109 / 3e-24 AT4G02460 763 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10016691 [exp] 81 / 3e-15 AT4G35520 360 / 8e-105 MUTL protein homolog 3 (.1) Lus10035985 [exp] 75 / 3e-13 AT4G35520 354 / 1e-102 MUTL protein homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078700 [exp] 536 / 2e-179 AT4G09140 1071 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Potri.014G130800 [exp] 123 / 2e-28 AT4G02460 936 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Potri.005G101900 [exp] 94 / 2e-19 AT4G35520 763 / 0.0 MUTL protein homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01119 [flax] [poplar] DNA_mis_repair DNA mismatch repair protein, C-terminal domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10034734 pacid=23142242 polypeptide=Lus10034734 locus=Lus10034734.g ID=Lus10034734.BGIv1.0 annot-version=v1.0 ATGGACATGAAATTCGAACTGGAGAGGCCGCCCTCGCCAAATCCAATGGAACCTCCAAGGATTCGCCGCCTCGAAGAGTCTGTCGTGAATCGAATTGCGG CAGGCGAGGTGATTCAACGGCCAGTCTCCGCTGTCAAAGAGCTAGTGGAGAACAGTTTAGACGCCCACTCTACCTCCATCAACGTCGTCATCAAGGACGG AGGCCTCAAGCTCATTCAAGTCTCCGATGATGGCCACGGCATTCGGTACGAAGATTTGCCGATACTCTGCGAGCGACACACGACGTCGAAGCTATCTGCT TACGAGGACTTGCAGACAATACAGTCGATGGGGTTTAGAGGAGAGGCGCTGGCTAGCATGACTCACGTGGGTCATGTCACGGTCACAACCATCACAGAAG GCCAGTTGCATGGTTACAGGGTATCATATAAAGATGGCGTTATGGAGCAGCAACCGAAGGCTTGTGCTGCTGTCAAAGGAACTCAGATAATGGTCGAGAA TTTATTCTACAACATGACTGCTCGGAAGAAGACACTTCAGAATACGGCCGATGATTACTTGAGAATTGTAGACGTGATAAGCCGATTTGCCATCCAGCAC ACAAGTGTGAGCTTTTCGTGCAGAAAGCATGGAGCTGGAAGAGCAGATGTCCACTCCTCAGCAACCTCATCGAGGCTTGATTCAATAAGATCTGTTTACG GGGCATCAGTATCCTGCAATCTGATGAAGATAGAAAGCTCTGACAATGATCCTGCAGGATCAATCTTTTCCATGGATGGATTTATCTCAACCTCAAATTA CATAGCAAAGAAAACAACAATGCATGGAGCTGGAAGAGCAGATGTCCACTCCTCAGCAACCTCATCGAGGCTTGATTCAATAAGATCTGTTTACGGGGCA TCAGTATCCTGCAATCTGATGAAGATAGAAAGCTCTGACAATGATCCTGCAGGATCAATCTTTTCCATGGATGGATTTATCTCAACCTCAAATTACATAG CAAAGAAAACAACAATGGTGCTTTTTATAAATGATAGATTAGTGGAATGCACTGCTTTGAAGAGAGCTCTTGAAATTGTTTATGCTGCTACCTTACCCAA AGCATCAAAACCTTTTGTTTACATGTCTATCAAACTTCCACCCGAGCATGTCGATGTGAATGTCCATCCAACAAAAAGAGAGGTCAGCCTTCTGAATCAA GAAATAATCATTGAGAGGATACAATTTCTTGTGGAATCGAAATTGAGGAGTTCAAACACCACAAGGGTGTTCGCAGAACAGACATGTCTAGAAGTTAGCA AGAAGACTGTAGACGCCTCCCTACTCAGTCCATTCAGTGCAAGCAAGGATTCAGCCATAGACTCTCCACTCACTGCATCGAAATCACAAAAGGTAGCAGT CAATAAAATTGTTAGAACTGATGCGCTAGATCCAGCAGGGAGGTTGGATGCTTACTTACAAGCAAAACCTCTCGAAGGTTCTGAAGTGAATCCTAGTTTG GCAGCAGTAAGGTCTGCTGTTAGGCAAAGACGAAATCCAAGGGAAACTGCAGATCTTACTAGCATACAGGAACTAATTGATGGCATGAAGCACAACTGTG ATTCTGCATCGAAATCACAAAAGGTAGCAGTCAATAAAATTGTTAGAACTGATGCGCTAGATCCAGCAGGGAGGTTGGATGCTTACTTACAAGCAAAACC TCTCGAAGGTTCTGAAGTGAATCCTAGTTTGGCAGCAGTAAGGTCTGCTGTTAGGCAAAGACGAAATCCAAGGGAAACTGCAGATCTTACTAGCATACAG GAACTAATTGATGGCATGAAGCACAACTGTGATTCTGGTTTGCTGGATATTGTAAGACAATGCACGTTTGTTGGAATGGCAGATAATGTTCTTGCACTGC TTCAGCATGGTACTCATCTGTATCTGGCAAATGTAGTGAACTTAAGCAAGGAGATGATGTATCAGCAAGTTCTGAGGCGGTTTGCTCATTTTAATGCCAT TCAGTTGAGTGATCCAGCCCCAATTAAAGATCTTATCATGCTGGCGCTGCAAGAGGACGATGTTGATGCAGAATCTTATCAAAATGATGACCTCAAACAG AAGATTGCAGAAATGAATATGGAATTGCTGAAGAAGAAAACAGAGATGCTGGACGAGTACTTTGGCATTTCCATAAACTCAGAGGGATATTTGTCGAGGC TTCCTGTCATTCTTGACCAATATACACCTGACATGGATCGAGTTCCAGATTTCTTACTCACTTTGGGCAATGACATTCAGTGGGAGAATGAGAAGAATTG CTTTCAAGGAATTGCTGCTGCCGTTGCCAACTTTTACGCCATGCATCCACCTCTGTTACCAAATCCATCAGGTGATGGGATAGACTTCTACAAGAAAAAT GCCACAAATGATCCTGAAGGAAATGCCGTTGGAGAGGACGTTCAAATGGAAGAGAGGGATGCGATTGATAATGACCTACTCTTGGAGGCAGAGAATGCAT GGGCACAGCGGGAATGGTCAATCCAGCATGTCCTGTTTCCATCAATGAGACTCTTTCTCGAGCCGCCCTCTTCAATGGCGACCAATGGCACGTTTGTAAA GGTTGCTTCCCTGGAGAGGCTTTACAGGGTTTTCGAAAGATGCTGA
AA sequence Show only first row Show all	>Lus10034734 pacid=23142242 polypeptide=Lus10034734 locus=Lus10034734.g ID=Lus10034734.BGIv1.0 annot-version=v1.0 MDMKFELERPPSPNPMEPPRIRRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAHSTSINVVIKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSA YEDLQTIQSMGFRGEALASMTHVGHVTVTTITEGQLHGYRVSYKDGVMEQQPKACAAVKGTQIMVENLFYNMTARKKTLQNTADDYLRIVDVISRFAIQH TSVSFSCRKHGAGRADVHSSATSSRLDSIRSVYGASVSCNLMKIESSDNDPAGSIFSMDGFISTSNYIAKKTTMHGAGRADVHSSATSSRLDSIRSVYGA SVSCNLMKIESSDNDPAGSIFSMDGFISTSNYIAKKTTMVLFINDRLVECTALKRALEIVYAATLPKASKPFVYMSIKLPPEHVDVNVHPTKREVSLLNQ EIIIERIQFLVESKLRSSNTTRVFAEQTCLEVSKKTVDASLLSPFSASKDSAIDSPLTASKSQKVAVNKIVRTDALDPAGRLDAYLQAKPLEGSEVNPSL AAVRSAVRQRRNPRETADLTSIQELIDGMKHNCDSASKSQKVAVNKIVRTDALDPAGRLDAYLQAKPLEGSEVNPSLAAVRSAVRQRRNPRETADLTSIQ ELIDGMKHNCDSGLLDIVRQCTFVGMADNVLALLQHGTHLYLANVVNLSKEMMYQQVLRRFAHFNAIQLSDPAPIKDLIMLALQEDDVDAESYQNDDLKQ KIAEMNMELLKKKTEMLDEYFGISINSEGYLSRLPVILDQYTPDMDRVPDFLLTLGNDIQWENEKNCFQGIAAAVANFYAMHPPLLPNPSGDGIDFYKKN ATNDPEGNAVGEDVQMEERDAIDNDLLLEAENAWAQREWSIQHVLFPSMRLFLEPPSSMATNGTFVKVASLERLYRVFERC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	0	1
AT1G66510			AAR2 protein family (.1.2.3)		Lus10028528 [exp]	2.4	0.8266
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	2.4	0.8704
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10027634 [exp]	5.0	0.8146
AT3G57360			unknown protein		Lus10032322 [exp]	5.3	0.7789
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	6.8	0.8286
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	11.0	0.8146
AT5G43680			unknown protein		Lus10004356 [exp]	11.8	0.7978
AT5G42470			unknown protein		Lus10033139 [exp]	13.6	0.7748
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	14.8	0.8037
AT5G56790			Protein kinase superfamily pro...		Lus10024111 [exp]	16.4	0.7597

Compare expression of checked genes

Lus10034734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.