Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29760 232 / 1e-70 Putative adipose-regulatory protein (Seipin) (.1) AT2G34380 218 / 2e-65 Putative adipose-regulatory protein (Seipin) (.1) AT5G16460 144 / 7e-39 Putative adipose-regulatory protein (Seipin) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033273 [exp] 782 / 0 AT1G29760 228 / 5e-69 Putative adipose-regulatory protein (Seipin) (.1) Lus10007323 [exp] 213 / 2e-65 AT1G29760 355 / 1e-119 Putative adipose-regulatory protein (Seipin) (.1) Lus10020213 [exp] 135 / 3e-35 AT5G16460 285 / 4e-93 Putative adipose-regulatory protein (Seipin) (.1) Lus10026836 [exp] 133 / 2e-34 AT5G16460 282 / 3e-92 Putative adipose-regulatory protein (Seipin) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072200 [exp] 226 / 4e-68 AT1G29760 382 / 4e-127 Putative adipose-regulatory protein (Seipin) (.1) Potri.013G085850 [exp] 144 / 6e-39 AT5G16460 269 / 5e-87 Putative adipose-regulatory protein (Seipin) (.1) Potri.003G025975 [exp] 71 / 3e-15 AT1G29760 60 / 5e-12 Putative adipose-regulatory protein (Seipin) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06775 [flax] [poplar] Seipin Putative adipose-regulatory protein (Seipin)
Representative CDS sequence Show only first row Show all	>Lus10034735 pacid=23142149 polypeptide=Lus10034735 locus=Lus10034735.g ID=Lus10034735.BGIv1.0 annot-version=v1.0 ATGGACGAACCACCAAACACACAACAAGCAAATCATGTGTTTCCTCTCCATCCCAATACTCTATACGACTCAATCAAATGCATCCTTTTCAAAGCCGCCA TCAATGGCGCCGAAAGACTGATGCTTGATGGGAAGAAGAAGCACAAGAATCCCTGCAACTTTATTCACACTTTAGAAAACAGAGGATCCTCTGCCTCCCC TGTTTTTGTAGGTGAAATGCTTATGATCAATCCCCATCACAAATCCGAACCCTTTCTCCCGATTTCCAGCATCGTCAAGCTTCCACATTTCCTGATGATG AAGTTCTTCGCTTTCCAGATCCACCTCCTGACATCTTTCTTTACATTCCCTATTCGGGTTACGAGCTTTTCGATCACCGTGCTGAAGCAGGCGGTACTGG GGCAATTGGTGGTCAAGAACATTGTTCTCCAGCTCTGCGGAGGTCTTGTCAGGAAAGCAATTGGAATTGGAAGTGGAGAAGCCAAGAAATCTGCGATGAC AACAAGAGACGTGGCTGTAAAGTTTGGGCGTGGAGTTATCTGGTCTTCCTATGTGGGTTTGGTGCTTGCCGGGATGCTGGCTTGTGGGTTCTTGTTTGGG AGTTTGCTTGTGAGCAGTGTGGTGGAGCCGCCGTTTGAGGGGAAGGAAGCTTTGAACTTTGACTATACTAAGGGTTCTCCGGTTGCTTACTTGCCGTTGG TTGTTCCTCACAGTCGGAAGCTGCAGCTTACTGTATCGTTGGTGATGCCAGAGTCGGATTACAATCGGAAGCTTGGCATGTTCCAGGTGAGGGTGGAGCT ACTCTCATCAATGGGGAAAGTGATGAAGACCACAAGCAGTCCATGCATACTGCAGTTCAAAAGCCAACCCATCCGCCTCGCAGAGACCCTCATCAAGAGT TTGCCACTCTTGATCGGTGCAATGTCAGAATCCCAAACAGTCGAACTGAGGATGGACGAACTCTCAGCAGGCGGCCTCAACGACCCAACTGCTTCGGTCA AAGTGTCCCTGGACCAACGAGCCGAGTATAAAGTACCCGGTGCTGGAATCCCTGAAGTTTATGCAGCATGGCTGAAGCTCGAATCTCAACTCCCTCCAAC AAAGAGGTTGTTGTGGCAATGGAGGAGAACTGTCTACGTCTGGACTGGAATTCTCCTGTTCTTGATACAGTTGGTGGTGGCATTCGTCTTCTGTAGACCT TTGATTATTCCGGCAGCTGGATTTGGAACGAAGTCATCGTCTATTGTGAAGGTGTTTGCTGCGAAGAAGAACATTGAATGA
AA sequence Show only first row Show all	>Lus10034735 pacid=23142149 polypeptide=Lus10034735 locus=Lus10034735.g ID=Lus10034735.BGIv1.0 annot-version=v1.0 MDEPPNTQQANHVFPLHPNTLYDSIKCILFKAAINGAERLMLDGKKKHKNPCNFIHTLENRGSSASPVFVGEMLMINPHHKSEPFLPISSIVKLPHFLMM KFFAFQIHLLTSFFTFPIRVTSFSITVLKQAVLGQLVVKNIVLQLCGGLVRKAIGIGSGEAKKSAMTTRDVAVKFGRGVIWSSYVGLVLAGMLACGFLFG SLLVSSVVEPPFEGKEALNFDYTKGSPVAYLPLVVPHSRKLQLTVSLVMPESDYNRKLGMFQVRVELLSSMGKVMKTTSSPCILQFKSQPIRLAETLIKS LPLLIGAMSESQTVELRMDELSAGGLNDPTASVKVSLDQRAEYKVPGAGIPEVYAAWLKLESQLPPTKRLLWQWRRTVYVWTGILLFLIQLVVAFVFCRP LIIPAAGFGTKSSSIVKVFAAKKNIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29760			Putative adipose-regulatory pr...		Lus10034735 [exp]	0	1
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	4.9	0.9407
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	5.5	0.9288
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002302 [exp]	6.0	0.9332
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	7.2	0.9364
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	8.3	0.9359
AT3G48860			unknown protein		Lus10036015 [exp]	11.0	0.9174
AT2G12646			PLATZ transcription factor fam...		Lus10008031 [exp]	12.0	0.9186
AT3G14470			NB-ARC domain-containing disea...		Lus10028279 [exp]	12.4	0.9085
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	12.6	0.9180
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	17.9	0.9201

Compare expression of checked genes

Lus10034735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.