Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19130 79 / 2e-16 Replication factor-A protein 1-related (.1) AT5G45400 74 / 5e-15 ATRPA70C Replication factor-A protein 1-related (.1) AT2G06510 62 / 6e-11 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033272 [exp] 360 / 9e-121 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1) Lus10023805 [exp] 136 / 4e-36 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10003955 [exp] 128 / 2e-33 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10034737 [exp] 122 / 1e-31 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10033436 [exp] 64 / 1e-11 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10040073 [exp] 45 / 1e-05 AT3G20395 94 / 5e-24 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G102700 [exp] 155 / 9e-43 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.018G065300 [exp] 69 / 3e-13 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04057 [flax] [poplar] Rep-A_N Replication factor-A protein 1, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034736 pacid=23142217 polypeptide=Lus10034736 locus=Lus10034736.g ID=Lus10034736.BGIv1.0 annot-version=v1.0 ATGGTGGGTCTGACAGAAGGCGCCATAGCCCGCATTACTGGAGGCGCTACTTCGCCTGATCTCCGGCCTGTACTTCAGGTGATGGAGCTGAAGCAGCTCC AGACGAAACGAATACAGGATGTGGACCAGTTCCGGTTGGTACTATCCGACGGTTGCGACTTGCAGCAGGCTACGCTCGGAACTCAGCTTAACCACTTGGT CAGAGATGGAAACTTGCGTGCTGGTTCCGTTGTTCAGTTGATTCATTACACTCGCATCACCATCCAAAATCGCGTGATTATTGTTATAGTTGATATGGCC GTGGTGGTTGAAGAATGTGGCTTTTTGATTGGTTTTCCTCTGTCATTGCAAAAACCTTCAGGACCATCACCTCCTGCACCTATAGATCATCCAATGAATG CTTACTCATATCCTCAGCTGTCTGATAGTGGTGGTATAATTGACTGTCAGGTAGCAGAAAATCCGAATCTGGTTGCAGCATCTGGGCAACACCCTCAGGT TAAGCAACCGAACAATGATTCTCATTCTATGAGTTATGATGCCGGAAGGAATATCGGTGCTACTCTTGTAGAATCATCACCATCAGGTATGCCTTACTTT GATCAGGCTCTGAAAGTACAAGAGGAGAGTTTCAATGGTGAAGAACGAGTGAAGGCAACTGCTATCAAGGCAGAGAAGGTGAACTTTGGTTCTCGTTCCA GAGCTCTTCTGGATTTGATGGAGAAGTTCAAAGCTGGGATCTTTACTTCTTCAACTCCCAAGGTGTAA
AA sequence Show only first row Show all	>Lus10034736 pacid=23142217 polypeptide=Lus10034736 locus=Lus10034736.g ID=Lus10034736.BGIv1.0 annot-version=v1.0 MVGLTEGAIARITGGATSPDLRPVLQVMELKQLQTKRIQDVDQFRLVLSDGCDLQQATLGTQLNHLVRDGNLRAGSVVQLIHYTRITIQNRVIIVIVDMA VVVEECGFLIGFPLSLQKPSGPSPPAPIDHPMNAYSYPQLSDSGGIIDCQVAENPNLVAASGQHPQVKQPNNDSHSMSYDAGRNIGATLVESSPSGMPYF DQALKVQEESFNGEERVKATAIKAEKVNFGSRSRALLDLMEKFKAGIFTSSTPKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45400		ATRPA70C	Replication factor-A protein 1...		Lus10034736 [exp]	0	1
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009023 [exp]	8.1	0.7965
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	14.7	0.8438
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	20.7	0.7954
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	23.4	0.8185
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10018149 [exp]	36.1	0.7935
AT3G15380			Plasma-membrane choline transp...		Lus10036620 [exp]	39.1	0.7868
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	39.8	0.7929
AT3G22550			Protein of unknown function (D...		Lus10012417 [exp]	62.0	0.7812
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	65.1	0.7835
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10030674 [exp]	66.4	0.7679

Compare expression of checked genes

Lus10034736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.