Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19130 483 / 3e-163 Replication factor-A protein 1-related (.1) AT5G45400 432 / 1e-142 ATRPA70C Replication factor-A protein 1-related (.1) AT2G06510 421 / 7e-141 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT5G08020 186 / 1e-51 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 172 / 1e-46 ATRPA70D Replication factor-A protein 1-related (.1) AT1G52950 47 / 3e-05 Nucleic acid-binding, OB-fold-like protein (.1) AT2G05642 43 / 0.0005 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033272 [exp] 673 / 0 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1) Lus10023805 [exp] 489 / 2e-164 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10003955 [exp] 482 / 8e-162 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10033436 [exp] 283 / 7e-89 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10033435 [exp] 256 / 2e-81 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10006548 [exp] 182 / 6e-50 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10040517 [exp] 181 / 1e-49 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 181 / 1e-48 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10003268 [exp] 139 / 4e-36 AT5G08020 282 / 2e-89 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G102700 [exp] 504 / 1e-170 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.018G065300 [exp] 430 / 6e-144 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.015G057300 [exp] 179 / 8e-49 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04057 [flax] [poplar] Rep-A_N Replication factor-A protein 1, N-terminal domain CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034737 pacid=23142275 polypeptide=Lus10034737 locus=Lus10034737.g ID=Lus10034737.BGIv1.0 annot-version=v1.0 ATGGTGGATCTCACAGAAGGTGCCATCGCCCGTATGCTGGAGGCGCTAAGTCCCCCTGATCTCCAGCCTATAATGCAGGTGAAGGAGCTGAATCGGGTGC CGACGCAATCATTGCAGCATCACGTTGACCGGTTCAAGTTGGTGCTATCTGACGGTTGCCACTTGCAGCCGGCAATGCTCGGAACTCAGATTAACTACTT TGTGACAGATGGAAACTTGCGAGCTGGTTCCCTTGTTCAGTTCACTAAATACACTTGCACAACTGTCCAAAATCGAAAGATTGTTATTGTAGTTGAGTTG CTGGTGGTGGAAAAGGAACGTCGTCTGATTGGGAATCCGGTGTCGTTGGAGGATACTTCAGGGCCATCCCATACATCTACATATCAGCCAATGAGCTATG TTGCTGGAAGAAATACTGGTGCTACTTCGTCAGATATGCCAAGGGTTCCTTCAGGCACTCACTGTAATATGTCTCAACCGTCATATCCGGAACCACCTGT TTCTGTACCATTTGTATGGAATGAGGTTCCTGGAGGAATGATCATTCCCTTTGGTGCTTTAAATCTATACCAGGCTAGATGGGCAATCAAAGCCAGGGTC ACTTCAAAAGCAGAAATGAGGCTCTACAGCAATCTTTGTTGTGCCGGGAAAGTCTTTTCTTTTGAACTTCTTGGCTCTGATGGGGCTGAAATTAGAGCAA CCTGCTTTAATGCAGTTGCCGATTACTTCTACCCCAAAATTGAAGTTGGCAGGTACTGTTACGAAGATGACAACTCGATTCCAAGGCAGCAGTTTCATTT TCGTCGAATAAATGAGGTTGAGTGGATGCATAACTATAACGTTGTGGATGTTATTGGAATTGTGTCCTCTGTCACTCCATCAACCTCAATGCTGAGAAAC AATGGTACTGAAAGCCAGAAGAGAAACCTACAATTAAAAGACATGTCTGGCTGTAGTGTTGAATTGACCCTATGTGGAAAGTTTTGCAGCGCAGAAGGTC AAGTACTGCAGAACATTTGCGACTCGGGGAAATTCCCTGTTCTTGCAGTTAAATCTGCCTGGATTAATTGCTTCAATGGCAAGACATTGGGGACCATTTC TACAAGTCAGCTATTTATCGATCCAGATTTCCCGGAGGCTCGTATTCTCAAACAATGGTTTGACAGGGAAGGGAGGAACTCCCCCTCTGTCTCTGTTTCC AGGAATTTGTCAACTGAGGGAAAAACTGATGTTCTAAATACTCTCTCTCAGATCAAAGAAGGTAAGCTTGGGACGTCCAGGAGTCCAGATTGGATTACTG TAAGCGTGGTTATCACTTTCATAGTGGTTGATAGGTTTTGCTACACATCTTGCCCTATAATGATCGGGCAGCGAAAGTTTAACCAGAAAGTTACAAAGAC TGGAGATGGGAAGTGGCGGTGTGAGAGGTGCGATCAATGTGTCGATGAATGTGATTACAGGTACATGCTCCAGCTTCAAATACAAGACCATACAGGCATT ACATGGGTGACCGTTTTCCAGGAATGTGCTGAACAGCTTATGGGAATATCTGCTGAAGATCTTCATTCTATGAGGTTCGGCCAACATGATGACAAGGGAT TCATGAACGTATTTTGCCGAGTTCTGTCACAAGATATGCATTCAAGCTGA
AA sequence Show only first row Show all	>Lus10034737 pacid=23142275 polypeptide=Lus10034737 locus=Lus10034737.g ID=Lus10034737.BGIv1.0 annot-version=v1.0 MVDLTEGAIARMLEALSPPDLQPIMQVKELNRVPTQSLQHHVDRFKLVLSDGCHLQPAMLGTQINYFVTDGNLRAGSLVQFTKYTCTTVQNRKIVIVVEL LVVEKERRLIGNPVSLEDTSGPSHTSTYQPMSYVAGRNTGATSSDMPRVPSGTHCNMSQPSYPEPPVSVPFVWNEVPGGMIIPFGALNLYQARWAIKARV TSKAEMRLYSNLCCAGKVFSFELLGSDGAEIRATCFNAVADYFYPKIEVGRYCYEDDNSIPRQQFHFRRINEVEWMHNYNVVDVIGIVSSVTPSTSMLRN NGTESQKRNLQLKDMSGCSVELTLCGKFCSAEGQVLQNICDSGKFPVLAVKSAWINCFNGKTLGTISTSQLFIDPDFPEARILKQWFDREGRNSPSVSVS RNLSTEGKTDVLNTLSQIKEGKLGTSRSPDWITVSVVITFIVVDRFCYTSCPIMIGQRKFNQKVTKTGDGKWRCERCDQCVDECDYRYMLQLQIQDHTGI TWVTVFQECAEQLMGISAEDLHSMRFGQHDDKGFMNVFCRVLSQDMHSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19130			Replication factor-A protein 1...		Lus10034737 [exp]	0	1
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10020787 [exp]	13.6	0.7700
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008876 [exp]	16.1	0.7514
AT3G61670			Protein of unknown function (D...		Lus10003040 [exp]	28.9	0.7681
					Lus10001089 [exp]	30.0	0.7182
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10009840 [exp]	42.1	0.7436
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	57.0	0.7441
AT5G62960			unknown protein		Lus10042109 [exp]	77.7	0.7211
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	77.7	0.7136
AT3G60410			Protein of unknown function (D...		Lus10010984 [exp]	165.9	0.6536

Compare expression of checked genes

Lus10034737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.