Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19450 674 / 0 Major facilitator superfamily protein (.1) AT5G45275 657 / 0 Major facilitator superfamily protein (.1) AT1G31470 510 / 2e-176 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT3G01630 466 / 1e-159 Major facilitator superfamily protein (.1) AT4G34950 200 / 5e-57 Major facilitator superfamily protein (.1) AT2G16660 168 / 1e-45 Major facilitator superfamily protein (.1) AT1G80530 152 / 1e-39 Major facilitator superfamily protein (.1) AT5G50520 144 / 5e-37 Major facilitator superfamily protein (.1) AT5G50630 144 / 5e-37 Major facilitator superfamily protein (.1) AT2G30300 133 / 1e-33 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033271 [exp] 717 / 0 AT4G19450 516 / 0.0 Major facilitator superfamily protein (.1) Lus10026422 [exp] 270 / 2e-83 AT2G30300 379 / 5e-126 Major facilitator superfamily protein (.1) Lus10015469 [exp] 244 / 2e-73 AT2G30300 396 / 5e-133 Major facilitator superfamily protein (.1) Lus10033270 [exp] 201 / 2e-62 AT5G45275 178 / 4e-54 Major facilitator superfamily protein (.1) Lus10015470 [exp] 205 / 6e-59 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1) Lus10025053 [exp] 185 / 2e-51 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 174 / 1e-47 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 163 / 1e-43 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 158 / 7e-42 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128200 [exp] 753 / 0 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.003G105600 [exp] 737 / 0 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.019G126700 [exp] 250 / 3e-76 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 202 / 7e-58 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.013G084000 [exp] 196 / 9e-56 AT2G30300 241 / 2e-73 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 194 / 1e-54 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 188 / 9e-53 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.013G154000 [exp] 171 / 9e-47 AT2G30300 380 / 4e-127 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 171 / 3e-46 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 157 / 2e-41 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10034738 pacid=23142253 polypeptide=Lus10034738 locus=Lus10034738.g ID=Lus10034738.BGIv1.0 annot-version=v1.0 ATGGCCGGACAGTCGAGGAAATGGATGATACTTGTGGCGACGATATGGATTCAGGCCTTCACCGGAACCAATTTCGATTTCTCCGCCTACTCCTCTCAAT TGAAATCGGTGCTAGGGATCTCCCAGGTCCAATTGAATTACCTGGCCGTCGCGTCCGATTTGGGCAAGGTTTTCGGCTGGTCGTCTGGACTTGCGCTCAT GTACTTCCCGCTCTGGACGGTTCTCTTCTCCGCGGCGTTCATGGGGCTTTTTGGCTACGGCCTTCAGTGGTTGGTGATTCGGGAATTCATATCTCTGCCT TACATTCTGGTGTTCATGCTCTGTCTAATAGCTGGGTGCAGCATATGCTGGTTCAACACTGTATGTTTTGTTCTCTGCATTCAAAACTTCCCAGTCAGTC GATCCTTGGCACTTTCCCTCACTGTAAGCTTCAACGGGGTAAGTGCAGCCATTTACACCCTTGCTGCTAATGCCATAGATTCATCATCGGATGAGCTGTA TCTTCTCTTAAATGCTCTTGCTCCCTTTATTGTCTCCGTTGTAGCTTTAGTTCCCATTCTCCGCCAACCAACTTTAGACCCTCTGTCTCCTGACGGTGTC CGCCGGGATTCAGTTGTATTTATCATCTTGAACTTGTTAGCCATACTCAACGGCCTGTACCTCCTCTTTTTCGCTACAAATACAACCGATCAAATGATTG CTCATATGCGATTTGCTGGAGCGGTTTTCCTCCTCATTCTGCCGCTATGCATCCCTGGGATTGTCTATGCCAGGCAATGGTTTCACGAGGCCATCGTCAA TACCAGTTTCCAAATTCCTGAAGGGTCTACCTTTATGCTTGTTGATGTTGATGATCTCGAGCTTCATAAGGAGCTTCTCATCCGCGAGTCGAGCACCAAT GGAGGAGACAAAGAATTTTTGGAATGGGATGTTTCACCACTTCTCGGGGAAAGTATCAACGACAGCGATTCGAAAGGGAGCTGCTGTGAAGCTGTTGTTG GGAAAGATAAATTGACAATGCTGGGAGAAGAGCACTCAGCTTTGAAACTTGTGAGGAGGTTGGATTTCTGGCTATACTTCCTTGCTTACTTCTGCGGAGG CACAATCGGACTCGTTTACAGCAATAACCTTGGACAAATTGCACAATCCCTTGGGCAGGGTCCTTACACTACATCCCTTCTCACGGTGTATTCATCCTTC TCGTTCTTCGGCCGCCTGCTTTCCGCAGCACCTGACTTCATTCGCACGAAGCTGTACTTTGCTAGGACAGCATGGCTAACCATTGGACTTCTCCCTACCC CGATTGCTTTCTTCCTGCTGCCTGCTGTGAGTGTGAACCATAACATTCTCATCACCAACATCCCGGTAGGATCGCTCATTTACGGGTTCCTGGCCGCCAT AGTGTACGATGCTAATGCAATGTCCGGGTCCGGTAAGGGAGGCATTATGAACGTGGTGAACTCGGACTCGCTAGTATGCATGGGGAAAGAGTGTTATTTC TTGACATTCGTGTGGTGGGGGTGTCTGGCTATTGTTGGGTTGGTTTCTAGTATGCTGCTCTTCTTGAGGACGAGACATGCTTATGATCAGTTTGAACGGA AACGTGCTGTATCGCAGCTTTATTAG
AA sequence Show only first row Show all	>Lus10034738 pacid=23142253 polypeptide=Lus10034738 locus=Lus10034738.g ID=Lus10034738.BGIv1.0 annot-version=v1.0 MAGQSRKWMILVATIWIQAFTGTNFDFSAYSSQLKSVLGISQVQLNYLAVASDLGKVFGWSSGLALMYFPLWTVLFSAAFMGLFGYGLQWLVIREFISLP YILVFMLCLIAGCSICWFNTVCFVLCIQNFPVSRSLALSLTVSFNGVSAAIYTLAANAIDSSSDELYLLLNALAPFIVSVVALVPILRQPTLDPLSPDGV RRDSVVFIILNLLAILNGLYLLFFATNTTDQMIAHMRFAGAVFLLILPLCIPGIVYARQWFHEAIVNTSFQIPEGSTFMLVDVDDLELHKELLIRESSTN GGDKEFLEWDVSPLLGESINDSDSKGSCCEAVVGKDKLTMLGEEHSALKLVRRLDFWLYFLAYFCGGTIGLVYSNNLGQIAQSLGQGPYTTSLLTVYSSF SFFGRLLSAAPDFIRTKLYFARTAWLTIGLLPTPIAFFLLPAVSVNHNILITNIPVGSLIYGFLAAIVYDANAMSGSGKGGIMNVVNSDSLVCMGKECYF LTFVWWGCLAIVGLVSSMLLFLRTRHAYDQFERKRAVSQLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19450			Major facilitator superfamily ...		Lus10034738 [exp]	0	1
AT3G04950			unknown protein		Lus10000934 [exp]	1.7	0.7719
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10033839 [exp]	6.5	0.7436
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	16.9	0.7377
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	24.4	0.7139
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10003973 [exp]	39.0	0.7312
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10018853 [exp]	40.0	0.7275
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	42.8	0.7040
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	46.6	0.7355
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Lus10041717 [exp]	51.9	0.7237
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10040660 [exp]	53.3	0.7372

Compare expression of checked genes

Lus10034738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.