Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35620 399 / 2e-136 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT1G31420 393 / 4e-134 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT5G62710 234 / 2e-72 Leucine-rich repeat protein kinase family protein (.1) AT1G78530 174 / 7e-52 Protein kinase superfamily protein (.1) AT5G07180 162 / 1e-44 ERL2 ERECTA-like 2 (.1) AT5G62230 161 / 3e-44 ERL1 ERECTA-like 1 (.1.2) AT2G26330 156 / 2e-42 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 155 / 5e-42 Leucine-rich repeat protein kinase family protein (.1) AT1G72300 149 / 5e-40 Leucine-rich receptor-like protein kinase family protein (.1) AT3G13380 146 / 5e-39 BRL3 BRI1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034753 [exp] 481 / 9e-169 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033291 [exp] 478 / 9e-162 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033104 [exp] 234 / 2e-72 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 234 / 3e-72 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031689 [exp] 159 / 3e-43 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 157 / 1e-42 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10005569 [exp] 150 / 1e-42 AT1G78530 462 / 2e-164 Protein kinase superfamily protein (.1) Lus10033533 [exp] 149 / 5e-40 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10016395 [exp] 148 / 2e-39 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105000 [exp] 420 / 2e-144 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G129000 [exp] 414 / 2e-142 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G071100 [exp] 239 / 4e-74 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G380800 [exp] 168 / 2e-49 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1) Potri.012G130400 [exp] 156 / 2e-42 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.015G132200 [exp] 156 / 2e-42 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.006G220100 [exp] 152 / 4e-41 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 148 / 1e-39 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G086500 [exp] 144 / 4e-38 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G472900 [exp] 143 / 6e-38 AT1G55610 1485 / 0.0 BRI1 like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034739 pacid=23142168 polypeptide=Lus10034739 locus=Lus10034739.g ID=Lus10034739.BGIv1.0 annot-version=v1.0 ATGACTCTGTTTGCTGGAAATAAGGACTTGTGTGGGAGGCAGATCAGTGTAGCTTGTAAAGATGATAGCAGGTCATCAAACAGTTCTTCTGGGTCTGAGT CAGCTCTAATTCAAGGAGGCAAGAAGAGATATCCTGCAAGGTTGATTGTCAGTGCTTTTGCAACCATTGGTGCTCTGCTTCTTGTGGCACTCATGTGCTT TTGGGGTTGTTTTCTATACAAGAAGTTTGGTAGAAATGAAAGTAGCAGTGTTGCTATGGATGTTAGTGGAGGTGCATCAATTGTAATGTTTCATGGAGAC TTGCCATACTCTTCCAAAGACATTATTAAGAAGCTGGAGACCTTGACAGAGGGGCATGTGATAGGTTGTGGGGGCTTTGGGACAGTGTACAAACTGGCAA TGGATGATGGCAATGTGTTTGCTTTGAAGAGAATCCTCAAGATGAATGAAGGGTTTGATCGCTTCTTTGAGAGGGAGCTTGAAATTCTTGGGAGCATAAC ACACAGGTACCTAGTGAATTTGCGAGGATATTGCAATTCTCCAACATCTAAATTGTTGATCTATGACTATTTACCTGGTGGAAGTCTTGATGAAGTGCTC CATGAAAAATCTGAACAACTTGACTGGGATGCACGCCTCAATATCATTGTCGGAGCTGCAAAAGGACTTGCATACCCGCATCATGATTGTTCCCCTAGAA TCATACACCGTGATATAAAATCAAGCAATATTCTACCTGATGGCAATTTAGCAGCTCGAGTGTCTGGGCAAAGGGAGATTGTCGATCCACAGTGTGAGGG TTTGCAAGCTGAATGTTTTGATGCCCTACTTTCAATTGCTATCCGATGTGTATCTTCAAATCCAGATGACCGGCCCACCATGCACAGAGTGGTTCAGTTG CTGGAATCAGAAGTAATGATCGTTCTTGGTCACAGTATCTAA
AA sequence Show only first row Show all	>Lus10034739 pacid=23142168 polypeptide=Lus10034739 locus=Lus10034739.g ID=Lus10034739.BGIv1.0 annot-version=v1.0 MTLFAGNKDLCGRQISVACKDDSRSSNSSSGSESALIQGGKKRYPARLIVSAFATIGALLLVALMCFWGCFLYKKFGRNESSSVAMDVSGGASIVMFHGD LPYSSKDIIKKLETLTEGHVIGCGGFGTVYKLAMDDGNVFALKRILKMNEGFDRFFERELEILGSITHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEVL HEKSEQLDWDARLNIIVGAAKGLAYPHHDCSPRIIHRDIKSSNILPDGNLAARVSGQREIVDPQCEGLQAECFDALLSIAIRCVSSNPDDRPTMHRVVQL LESEVMIVLGHSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034739 [exp]	0	1
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001753 [exp]	1.0	0.8649
AT5G07370		ATIPK2A, IPK2a	inositol polyphosphate kinase ...		Lus10009397 [exp]	4.2	0.8107
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	7.5	0.7983
AT3G53850			Uncharacterised protein family...		Lus10010881 [exp]	8.5	0.7707
AT5G44440			FAD-binding Berberine family p...		Lus10023367 [exp]	8.9	0.7719
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	9.2	0.7886
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020051 [exp]	9.8	0.7787
AT1G80500			SNARE-like superfamily protein...		Lus10041670 [exp]	12.0	0.7320
AT1G69080			Adenine nucleotide alpha hydro...		Lus10036814 [exp]	14.3	0.7517
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	18.5	0.7681

Compare expression of checked genes

Lus10034739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.