Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008301 [exp] 167 / 2e-49 ND / Lus10033269 [exp] 163 / 5e-48 ND / Lus10022964 [exp] 115 / 3e-33 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103100 [exp] 143 / 2e-40 ND / Potri.001G130800 [exp] 140 / 2e-39 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034741 pacid=23142296 polypeptide=Lus10034741 locus=Lus10034741.g ID=Lus10034741.BGIv1.0 annot-version=v1.0 ATGGCTTCCGGTCGTTCCTTTGTATCAAGAACCGAACTTTTTGTACCTACAGTACCCCTTGATTTTATTATCTCTGCAGCTATTTATCTATTTAGACGTT ATTTGTACAAACCCGAAATTGTTGGTTGTTCAGTCGAGTCTACTAAGAAAATTGGTACAATTCAGAAGTATTCTTTTCAATTCTTTTTCTTCTCGGACTC GCTCGCTGGAATTCAAATTCTCTTTGAGTTATGTGCAGTGGAAACTGGAGACCCGACGAAGAAGCGCAGGGTGGAACGCTCTCGGAAGATGGCAGAAGCG AAGGAGAGGAGTTCGACACCTGCAATTCCATCAGATATGCCGTCAGCGACCAAAAGGTGTGAGCTTTTGGAGAAGGAAGTCAGATCACTCAAACTCAACT TGTCTTTCATGAACCGAAAGGATTCTGAACAGACTAAGCAGATCGAGGATCTCCAGAAACAGAACGAGGCGTTGACAGAAGAGAAAGAACATCTGCTCGA GGAGATGGAGAGGATACTTTCCGAAACCGGCAAGTTCTGA
AA sequence Show only first row Show all	>Lus10034741 pacid=23142296 polypeptide=Lus10034741 locus=Lus10034741.g ID=Lus10034741.BGIv1.0 annot-version=v1.0 MASGRSFVSRTELFVPTVPLDFIISAAIYLFRRYLYKPEIVGCSVESTKKIGTIQKYSFQFFFFSDSLAGIQILFELCAVETGDPTKKRRVERSRKMAEA KERSSTPAIPSDMPSATKRCELLEKEVRSLKLNLSFMNRKDSEQTKQIEDLQKQNEALTEEKEHLLEEMERILSETGKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034741 [exp]	0	1
AT3G62080			SNF7 family protein (.1.2)		Lus10009262 [exp]	3.7	0.7498
					Lus10027424 [exp]	7.4	0.6412
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10024031 [exp]	9.8	0.6965
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Lus10002884 [exp]	19.0	0.6382
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10035865 [exp]	22.0	0.7201
AT4G36850			PQ-loop repeat family protein ...		Lus10022491 [exp]	28.9	0.6519
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10034742 [exp]	32.2	0.6736
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010105 [exp]	35.0	0.6217
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	37.1	0.6552
					Lus10028460 [exp]	41.2	0.6474

Compare expression of checked genes

Lus10034741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.