Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31650 605 / 0 ATROPGEF14, ROPGEF14 RHO guanyl-nucleotide exchange factor 14 (.1) AT5G02010 330 / 1e-106 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G38430 327 / 2e-105 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G05940 320 / 5e-102 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G24620 313 / 2e-100 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G79860 313 / 2e-100 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT3G16130 307 / 2e-97 PIRF2, ATROPGEF13, ROPGEF13 phytochrome interacting RopGEF 2, RHO guanyl-nucleotide exchange factor 13 (.1) AT4G13240 305 / 2e-97 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT5G19560 303 / 6e-97 ATROPGEF10, ROPGEF10 ARABIDOPSIS THALIANA ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10, ROP uanine nucleotide exchange factor 10 (.1) AT4G00460 303 / 7e-97 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033282 [exp] 1027 / 0 AT1G31650 645 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10035676 [exp] 707 / 0 AT1G31650 579 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10037260 [exp] 702 / 0 AT1G31650 563 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10009874 [exp] 334 / 8e-108 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 328 / 1e-105 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 327 / 1e-104 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 327 / 2e-104 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021234 [exp] 322 / 7e-104 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 320 / 6e-102 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G127300 [exp] 693 / 0 AT1G31650 667 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Potri.003G106400 [exp] 669 / 0 AT1G31650 667 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Potri.005G247100 [exp] 336 / 8e-109 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 335 / 3e-108 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 334 / 3e-107 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.004G179742 [exp] 333 / 3e-107 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.010G196000 [exp] 330 / 5e-106 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 330 / 8e-106 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.002G159700 [exp] 316 / 4e-102 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G014100 [exp] 318 / 7e-102 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10034742 pacid=23142158 polypeptide=Lus10034742 locus=Lus10034742.g ID=Lus10034742.BGIv1.0 annot-version=v1.0 ATGATGAGAAGCAAACTCGCTTGCTGCACCCGCGACAGAGGAATCAGCTTCGACTTTGAACAAGATGACAGGGTAATTACGTATGATGGACTGGAGAGTT GTATCCAGAACAATAATAATAATCAGTCTTTTGAGAATGAGAGTGGGACTAGTAGAGGGGACGGATTCGTTAGCGATTCGTTTGATGAATGTGCGTCGAG CTGTTCATCGAGCAAGGATGCGTTTGGGTCTTTTTCTTCTAAATGGATGAATGTGAAAAGAGATGATCAGAGCTTTGATGACTGCTGCTGGGACATCCCG GAAAGCCCACAACACTTTTACGCCAAAGAGAAGCCGTCTTATGGAGTTGAGCTCTCAGATGTTGAGACGATGAAGGAGAAGTTTGCAAAGCTGTTGTTGG GTGAAGATGTCACAGGTGGGACTAAGGGACTCACTGCAGCTTTAGCATTGTCCAATGGTGTAACAAGTCTTGCAGCATCTGTGTTTGGGGAGCTATGGAA ATTGGAGCCATTGCCTGAAGAGAGGAAGAACAAGTGGAGAAGGGAGATGGAGTGGTTACTTTCTCCCACCAATTATATGGTTGAGTTGGTTCCTGCTAAA CAACATGGTGCCAATGGCAGGACAATGGAGATAATGACACCGAGAGCCCGTGCAGACATCCTCATGAATCTTCCTGCACTTAAGAAGTTGGACTCGATGC TAATCGAGATATTGGATTCAATGGTGAAGAATGAGTTTTGGTACTCAGAGGTTGGGAGCAGAGCTGAAGGAAGAAACAAGAGCACAAGGCTGAGCAAGAG ATGGTGGCTTCCGCTTCCGCAAGTTCCAACAGCCGGGCTCTCCGATTCGGAAAGGAAGAAGCTGGTCCAGAAATCCAGGGTTGTTTACCAAGTATTTAAA GCTGCCAAAGCCATCAATGATAGTGTTCTGCTTGAAATGCATGTCCCAACCATAATCAAAGATGCACTTCCCACGTCTGGAAGGGAGAATCTTGGGGAGG AACTGTACAAGTTACTAACAATGGATTCAGCCACAATCGATGAGATAATTGATTCTCTGAATCTAAAATCTGAGCATAGAGTGATGGAAGTAGTGAACAA GTTGGAAGCAGCAATATTAGGATGGAAAGAGAGAATCAAAGCATCACAATGTGGAAAGAAATCCCCAATGAGAACATCTTGGACTTTTGCCAAGGACCCC ATTTCTGAACTTGATAAGGTTGAGGGTCTTGTAGACAAAGCTGAAGCGATGGTCCAGCAACTTAAGGCAACCCATCCAAACCTTCCTCAAACATTTCTTG ATGCTACCAAAATCCACTATGGCAAGGATGTAGGACATGCAATCTTGGAAGCATACTCCCGGGTTTTGGGAAACTTGGCATGCAGCATATTGACAAGGAT AGGTGACATTCTACAAGAGGAAGTTCTGAGTAATCCAAATTCACCAGCAGCTGCTCATGTTATTAAGGGGGTGTTTAATATGTCAGCCGGTGTTCATGGT ATGAAACTGCATCATGGAGAGTTTGATGAGATGAATAAGGTGGAAGGAGGGAAGTTGCGGTATTCAGATGCCAGCAATTCGATTTCGGATTGGGAATTTT GCTATAGCGAACCAAAATCAAGCTCGTCTGCAAATGACACACCTAGCCGGAGTTGA
AA sequence Show only first row Show all	>Lus10034742 pacid=23142158 polypeptide=Lus10034742 locus=Lus10034742.g ID=Lus10034742.BGIv1.0 annot-version=v1.0 MMRSKLACCTRDRGISFDFEQDDRVITYDGLESCIQNNNNNQSFENESGTSRGDGFVSDSFDECASSCSSSKDAFGSFSSKWMNVKRDDQSFDDCCWDIP ESPQHFYAKEKPSYGVELSDVETMKEKFAKLLLGEDVTGGTKGLTAALALSNGVTSLAASVFGELWKLEPLPEERKNKWRREMEWLLSPTNYMVELVPAK QHGANGRTMEIMTPRARADILMNLPALKKLDSMLIEILDSMVKNEFWYSEVGSRAEGRNKSTRLSKRWWLPLPQVPTAGLSDSERKKLVQKSRVVYQVFK AAKAINDSVLLEMHVPTIIKDALPTSGRENLGEELYKLLTMDSATIDEIIDSLNLKSEHRVMEVVNKLEAAILGWKERIKASQCGKKSPMRTSWTFAKDP ISELDKVEGLVDKAEAMVQQLKATHPNLPQTFLDATKIHYGKDVGHAILEAYSRVLGNLACSILTRIGDILQEEVLSNPNSPAAAHVIKGVFNMSAGVHG MKLHHGEFDEMNKVEGGKLRYSDASNSISDWEFCYSEPKSSSSANDTPSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10034742 [exp]	0	1
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	5.5	0.8483
AT4G23020			unknown protein		Lus10006336 [exp]	6.0	0.8159
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10035029 [exp]	6.3	0.8645
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	11.0	0.8407
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	15.3	0.8397
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10021700 [exp]	16.4	0.8429
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10017856 [exp]	18.3	0.8471
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10015868 [exp]	18.6	0.7966
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	23.1	0.8121
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10015790 [exp]	23.2	0.8166

Compare expression of checked genes

Lus10034742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.