Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12740 428 / 2e-150 ALIS1 ALA-interacting subunit 1 (.1) AT1G79450 427 / 5e-150 ALIS5 ALA-interacting subunit 5 (.1.2) AT1G16360 425 / 3e-149 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT1G54320 420 / 3e-147 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT5G46150 347 / 1e-118 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033283 [exp] 658 / 0 AT1G79450 447 / 3e-158 ALA-interacting subunit 5 (.1.2) Lus10001762 [exp] 429 / 1e-150 AT1G54320 527 / 0.0 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) Lus10038516 [exp] 394 / 5e-137 AT5G46150 491 / 9e-176 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Lus10001834 [exp] 391 / 7e-136 AT1G54320 471 / 1e-167 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) Lus10023290 [exp] 390 / 2e-135 AT5G46150 482 / 3e-172 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G139300 [exp] 475 / 5e-169 AT3G12740 437 / 5e-154 ALA-interacting subunit 1 (.1) Potri.004G081100 [exp] 461 / 2e-163 AT1G79450 429 / 4e-151 ALA-interacting subunit 5 (.1.2) Potri.010G173900 [exp] 415 / 3e-145 AT3G12740 512 / 0.0 ALA-interacting subunit 1 (.1) Potri.008G082100 [exp] 415 / 3e-145 AT3G12740 479 / 6e-171 ALA-interacting subunit 1 (.1) Potri.001G381500 [exp] 397 / 5e-138 AT1G79450 398 / 2e-138 ALA-interacting subunit 5 (.1.2) Potri.011G082100 [exp] 373 / 6e-129 AT5G46150 456 / 4e-162 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Potri.001G337466 [exp] 54 / 3e-09 AT1G16360 50 / 7e-09 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03381 [flax] [poplar] CDC50 LEM3 (ligand-effect modulator 3) family / CDC50 family
Representative CDS sequence Show only first row Show all	>Lus10034744 pacid=23142169 polypeptide=Lus10034744 locus=Lus10034744.g ID=Lus10034744.BGIv1.0 annot-version=v1.0 ATGGGTCCGTTGGTGGTGCAAGCACCTCCTCCTCTTCCTCCTCCAAGAAAAAGCAATCCAAGAGACCTAAATGTAATCAAATCCTCTGGTTCGTCTTTCT TCAATTCAACACTGTTCATAAGACATTCTTCATTGAGTCATGAAACTGCAGATTCTAGGTTTTCGCAGCAGGAACTTCCGGCATCTAAATTCATCATAAC ACCAACGGTGGTCATTTCAACGTTTGTTGCAATCGCCATTGTGTTCATCCCATTCGGACTTGCTTCCTTATTTGCATCAGACCATGTTGTCGAGATAATG CATCGGTATGATAATCTCTGTCTTCCTGATACTTCAAATGCTGTGAAACACATCCAGAGCAAAGAGACCAACAAAACTTGCGCTGACAAATTGACTGTCT CTAAGGAAATGAAGGGTCCAATCTTCATATATTACCAGCTTGATAATTTCTATCAGAATCACCGCCGGTATGTGAAAAGTCGAAGCGACAAACAATTGAA GAGCAAAGCAAGTGCGAAAGACACTGAAAGCTGTGCTCCTGAGGCTAACACTGACAAAGGCCCCATTGTTCCTTGTGGGCTTGTTGCTTGGAGTCTTTTC AACGACACATACAAATTCGTTGTTAAGAACAAAGCTTTAGATGTCAACAAGAAGAACATCGCATGGGATAGCGACAAGAGCCACAAGTTTGGGTCCGATG TATACCCGCAGAATTTTCAGAGTGGAGGCCTCATTGGTGGTGGGAAACTAGAACCGAGCAAACCGCTGAGCGAACAGGAGGATTTGATTGTATGGATGCG AACGGCTGCATTGCCGACATTTCGAAAACTGTACGGAAGAATCGAGGGTGACCTACAAGTGAATGATAATATTGAGCTTGTGGTGGAGAATAACTATAAT ACATATAGCTACGGAGGGAAGAAATGGCTCATACTGTCGACGACAAGTTGGATAGGAGGGAAGAATGAGTTCCTGGGGATTGCATACTTGACCATTGGTG GTTTATGCTTGTTCTTGGCGGTCACCTTCATACTTATCTATGTGCTTAGGCCAAGGCAACTTGGGGATCCGTCTTACTTGTCGTGGAATAAGCAACCACG AGAGCCATGA
AA sequence Show only first row Show all	>Lus10034744 pacid=23142169 polypeptide=Lus10034744 locus=Lus10034744.g ID=Lus10034744.BGIv1.0 annot-version=v1.0 MGPLVVQAPPPLPPPRKSNPRDLNVIKSSGSSFFNSTLFIRHSSLSHETADSRFSQQELPASKFIITPTVVISTFVAIAIVFIPFGLASLFASDHVVEIM HRYDNLCLPDTSNAVKHIQSKETNKTCADKLTVSKEMKGPIFIYYQLDNFYQNHRRYVKSRSDKQLKSKASAKDTESCAPEANTDKGPIVPCGLVAWSLF NDTYKFVVKNKALDVNKKNIAWDSDKSHKFGSDVYPQNFQSGGLIGGGKLEPSKPLSEQEDLIVWMRTAALPTFRKLYGRIEGDLQVNDNIELVVENNYN TYSYGGKKWLILSTTSWIGGKNEFLGIAYLTIGGLCLFLAVTFILIYVLRPRQLGDPSYLSWNKQPREP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Lus10034744 [exp]	0	1
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10011906 [exp]	5.0	0.9752
					Lus10015654 [exp]	7.2	0.9733
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	7.5	0.9688
					Lus10007549 [exp]	10.5	0.9733
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	12.6	0.9662
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	14.2	0.9662
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	14.7	0.9685
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	15.6	0.9632
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	16.1	0.9667
					Lus10000191 [exp]	16.9	0.9563

Compare expression of checked genes

Lus10034744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.