Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31720 91 / 4e-23 Protein of unknown function (DUF1218) (.1) AT4G19370 88 / 1e-21 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033286 [exp] 210 / 1e-69 AT4G19370 119 / 6e-34 Protein of unknown function (DUF1218) (.1) Lus10037256 [exp] 101 / 3e-26 AT1G31720 94 / 2e-23 Protein of unknown function (DUF1218) (.1) Lus10035672 [exp] 93 / 2e-23 AT4G19370 104 / 9e-28 Protein of unknown function (DUF1218) (.1) Lus10010077 [exp] 42 / 7e-05 AT5G17210 263 / 8e-90 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235000 [exp] 127 / 3e-37 AT1G31720 131 / 8e-39 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 48 / 7e-07 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10034746 pacid=23142278 polypeptide=Lus10034746 locus=Lus10034746.g ID=Lus10034746.BGIv1.0 annot-version=v1.0 ATGAGTGCAGAGATAGTAGAGGAGGATGAGTTTGATTCAGTTATGGTGATTAACGATGGATTGAAAGGATTTCAGATCTGGGAAAAGGAGGACGTGAAAC TGCACAACGAGCTGTGTGGTATGCCGCAGAGCCACGCATTCAGGTTGGGAGTAGCGGCGTTAGTATGCCTGGTAATCGCACAGACGGTGAGCACCTTGGC AGTCTGCAGCAACCTATCATCATCCTCCACCGCTAAGAACAAAAGGGAACCGACGATGATCTTGTCCCTTCTCCTCTTGCTTCTATCCTGGGTGAGTTTT GGGGTGGCGGTGGTGCTGTTGGTCGGAGCAACAAGCATGAGCACAAGGCAGGCGTATGGAGGAGAAGGATGGGTGGACGAAAAGTGCTACGTTGTGAAAG AAGGTATCTACGCTAGCTCAGGGGTTTTGACGTTGGTTTCCTCCGCCACCGCCATTGCCTCCACCTTCAGAAAAGATGAGTATGACAACAAGGTGGTCGT AGTAGATTACATGAACAAGCTGCTGTTACTCCCTCTTGACATTTTTATTTTATTTTGTTTCTAA
AA sequence Show only first row Show all	>Lus10034746 pacid=23142278 polypeptide=Lus10034746 locus=Lus10034746.g ID=Lus10034746.BGIv1.0 annot-version=v1.0 MSAEIVEEDEFDSVMVINDGLKGFQIWEKEDVKLHNELCGMPQSHAFRLGVAALVCLVIAQTVSTLAVCSNLSSSSTAKNKREPTMILSLLLLLLSWVSF GVAVVLLVGATSMSTRQAYGGEGWVDEKCYVVKEGIYASSGVLTLVSSATAIASTFRKDEYDNKVVVVDYMNKLLLLPLDIFILFCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	1.0	0.9712
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	1.4	0.9392
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10021206 [exp]	2.4	0.9057
AT3G19950			RING/U-box superfamily protein...		Lus10033682 [exp]	3.2	0.8867
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10020272 [exp]	4.0	0.9118
AT5G46030			unknown protein		Lus10014995 [exp]	5.9	0.8952
AT2G27410	B3		Domain of unknown function (DU...		Lus10027286 [exp]	7.5	0.9296
					Lus10040440 [exp]	11.0	0.8562
AT5G42510			Disease resistance-responsive ...		Lus10000376 [exp]	12.5	0.8030
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	12.6	0.9060

Compare expression of checked genes

Lus10034746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.