Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45330 138 / 8e-35 DCP5-L decapping 5-like (.1) AT1G26110 138 / 1e-34 DCP5 decapping 5 (.1.2) AT4G19360 93 / 7e-22 SCD6 protein-related (.1.2) AT4G19340 55 / 3e-08 SCD6 protein-related (.1) AT4G19330 56 / 5e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19260 55 / 5e-08 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033287 [exp] 704 / 0 AT1G26110 222 / 3e-65 decapping 5 (.1.2) Lus10017884 [exp] 138 / 1e-34 AT1G26110 462 / 6e-156 decapping 5 (.1.2) Lus10017885 [exp] 136 / 6e-34 AT1G26110 473 / 5e-160 decapping 5 (.1.2) Lus10035052 [exp] 135 / 2e-33 AT5G45330 422 / 4e-140 decapping 5-like (.1) Lus10035051 [exp] 126 / 2e-30 AT1G26110 297 / 1e-92 decapping 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235100 [exp] 277 / 2e-86 AT5G45330 229 / 7e-68 decapping 5-like (.1) Potri.017G111500 [exp] 146 / 2e-37 AT1G26110 208 / 2e-59 decapping 5 (.1.2) Potri.004G104000 [exp] 145 / 3e-37 AT1G26110 207 / 7e-59 decapping 5 (.1.2) Potri.008G114900 [exp] 140 / 3e-35 AT1G26110 419 / 5e-139 decapping 5 (.1.2) Potri.010G131400 [exp] 136 / 7e-34 AT1G26110 494 / 1e-168 decapping 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09532 [flax] [poplar] FDF FDF domain
Representative CDS sequence Show only first row Show all	>Lus10034747 pacid=23142218 polypeptide=Lus10034747 locus=Lus10034747.g ID=Lus10034747.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCGCCGCCGTCATCATCGCCGGCGTTGCAGCCATCTTCTTCCGATACCCCTCCTGTTTCCGCTCCTTCTTCTTCATCCGCACCAGGATCGT CAAATGTGATCGATTCTTACCTAGGAAGCCACATTAGTCTCATTTCCAAGTTTGAAATTCGCTATGAAGGTGTCCTCTATCGCCTAGACGTTCAGGATTC CACGCTTGCCCTAAAAGATGTCAGGTCATATGGAACGGAGGGTCGAAAGAAAGATGGCCCACAAGTTCCTGCGAGTGAGAAGGTGTATGATTTCATTCTA TTTCGTGGGAGTGATATTAAGGATTTACAAGTGAAGTCCCCACCTCCTGCTCCAACTTCCGAGCAAATATATGAAGACCCTGCCATTATCCAGTCACAGT ATGTTAGTGCCCCTTCAAGTTCATCATCAGCTCCAATTGCTCGGAAGACTAGCATGGAATCAAGTCAAGTACCGAATGCACCTGCACCAACAATTGGAGT CTATTCTGCTCCATTGCCTTCACATCCTCCTGAGATTTACCCATCAAATCTTTCTCAAGCAACGCAGACTGTTAGTCAACCTTTATCGTCACAGATGTAT TGGCAAGGATATAGTGGAAATCCACTCAGCAGGCCTGCTCCTGCTCATCCATTGATCCCTTTCAATCCTTCATCTATTGCTCCATCTTCCTTCCCAAATC AAGTGCTAGCTCCTGGACCGGGTGTTTCTCCAGTAATGGGATTATTGCATACATCAGAAGCTCCATCTAATGCCTCAAATGTCTCAAATGCCGCAAATCC TAGTTTCTCGCATTCTCTTATTCCACCAGAAAGTTCTTCATCTCCTTTGATTCCACCCTCAGCATTCACAATTGCACCTCAAGTACCTTTTTCCGCATAT GGAATTTCTGGTGGAGGAGATCTAAAGACTGGTACAAATCAAAATGTTAGCAGTGCTGAGTCTAACCCTGAAGGGATGCCTCCTTTACAGCCCATGCCTT ATTCTGCTTCCTCTTCCAATCCCTTGATATCACAACTTCCGTACCCTTCGAGTTTGAATCAGTTTTCACAGTCTTCCCTTTTCCCTATGCAAAGTATGTA CTCTACACAGAATAGCATGATGCTGAACCCACCGTCATCGGCAACCTCGTCCTTGATTTCTACTGCAGCTTCTCAAGCACCATTATTGCCATTGCCGAGC TCGACACAGACCATGTTCTCCGAAGAATTTGATTTTGAAGCAATGAATGAGAAGTTCAAAAAGGATGAAGTGTGGGGTCATATGGGAAAGGCAAAGCCAA ATAATGAAGTCGACATTCTCGAGGGCAATGCATTGCAACAAAATGTAGCTCTTCACTTGCCAAACAATTTTGATCCTCAGCCTGCATACAAGAAAGACGA CTTCTTTGACACAATTTCTTGTCATTCACGCGGCCGGGGAAGGAATGGGCAGTTTAGGTTTTCTGATCGAATGAGGCACGATACTGAGACATTCGGCAGC TTTGATCAGAGACCTAACATGGGATACGGTCGCTACAATGGCCCTGGACGTGGCTATAATAACTATAGTGGTTCACAAAACTGGGGAAGGGGGTATGGCT ATGGTGGCAGAGGGCAAGGGAACATGCATTTCTGA
AA sequence Show only first row Show all	>Lus10034747 pacid=23142218 polypeptide=Lus10034747 locus=Lus10034747.g ID=Lus10034747.BGIv1.0 annot-version=v1.0 MASSPPSSSPALQPSSSDTPPVSAPSSSSAPGSSNVIDSYLGSHISLISKFEIRYEGVLYRLDVQDSTLALKDVRSYGTEGRKKDGPQVPASEKVYDFIL FRGSDIKDLQVKSPPPAPTSEQIYEDPAIIQSQYVSAPSSSSSAPIARKTSMESSQVPNAPAPTIGVYSAPLPSHPPEIYPSNLSQATQTVSQPLSSQMY WQGYSGNPLSRPAPAHPLIPFNPSSIAPSSFPNQVLAPGPGVSPVMGLLHTSEAPSNASNVSNAANPSFSHSLIPPESSSSPLIPPSAFTIAPQVPFSAY GISGGGDLKTGTNQNVSSAESNPEGMPPLQPMPYSASSSNPLISQLPYPSSLNQFSQSSLFPMQSMYSTQNSMMLNPPSSATSSLISTAASQAPLLPLPS STQTMFSEEFDFEAMNEKFKKDEVWGHMGKAKPNNEVDILEGNALQQNVALHLPNNFDPQPAYKKDDFFDTISCHSRGRGRNGQFRFSDRMRHDTETFGS FDQRPNMGYGRYNGPGRGYNNYSGSQNWGRGYGYGGRGQGNMHF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10034747 [exp]	0	1
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	6.7	0.8685
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10027132 [exp]	9.5	0.8128
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	11.3	0.8817
AT1G16520			unknown protein		Lus10031193 [exp]	12.7	0.8381
AT3G29310			calmodulin-binding protein-rel...		Lus10038064 [exp]	13.6	0.8729
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	15.0	0.8387
AT5G57100			Nucleotide/sugar transporter f...		Lus10020017 [exp]	15.0	0.8657
AT3G18800			unknown protein		Lus10020872 [exp]	15.6	0.8785
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	16.2	0.8587
AT2G45340			Leucine-rich repeat protein ki...		Lus10030279 [exp]	17.7	0.8387

Compare expression of checked genes

Lus10034747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.