Plant FIBer expression Database

Lus10034748 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31350 107 / 7e-28 KUF1 KAR-UP F-box 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033288
[exp]
223 / 3e-72 AT1G31350 362 / 3e-123 KAR-UP F-box 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G230600
[exp]
132 / 2e-37 AT1G31350 352 / 2e-119 KAR-UP F-box 1 (.1)
Potri.009G024000
[exp]
129 / 3e-36 AT1G31350 330 / 1e-110 KAR-UP F-box 1 (.1)
Potri.019G044000
[exp]
112 / 4e-30 AT1G31350 277 / 3e-90 KAR-UP F-box 1 (.1)
PFAM info
Representative CDS sequence
>Lus10034748 pacid=23142282 polypeptide=Lus10034748 locus=Lus10034748.g ID=Lus10034748.BGIv1.0 annot-version=v1.0
ATGAAGGACGGGAGGTTCTGCAGAGAAGCGATCGACGCTGTTGGGTGGAAAGGGAAGCTGTGTATGGTGAACGTGAAGGGAAATTCGGCGGCGAAAGAAG
GCGCGGTTTACGACGTCCGTCGGAACTCGTGGGAGGAGATGCCGCCCGGGATGATCGGAGGATGGAAGGGTCCGGTGGCGGCGATGGAAGAGGAAGTAAT
GTACGTGGTGGACGAAGCGGAAGGGGCGGTGAGAAGATACGTGCCGGAGAACGACGGTTGGGAAGAGGTGGTGGCGTCTCCGTTGATGAGAGGTGCTCAG
CAGGTTGCCGCCGGTGGAGGTAGGGTGTGCGTCGTTTGCGGCGGTGGGATTGTGGTAGTTGATGTGATGACGGAGCCGGCGAGGATTTGGGTGGTTGACT
TGCCCAATGGGTTTGATTCTGCCGTCGCTGTTCATGTACTGCCAAGGATGAGCCGGCCGGAAATAGCTTTCCCTTCAGCTTCATGTGCCTTCATGTCTAC
GGATTAA
AA sequence
>Lus10034748 pacid=23142282 polypeptide=Lus10034748 locus=Lus10034748.g ID=Lus10034748.BGIv1.0 annot-version=v1.0
MKDGRFCREAIDAVGWKGKLCMVNVKGNSAAKEGAVYDVRRNSWEEMPPGMIGGWKGPVAAMEEEVMYVVDEAEGAVRRYVPENDGWEEVVASPLMRGAQ
QVAAGGGRVCVVCGGGIVVVDVMTEPARIWVVDLPNGFDSAVAVHVLPRMSRPEIAFPSASCAFMSTD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G31350 KUF1 KAR-UP F-box 1 (.1) Lus10034748
[exp]
0 1
AT2G43590 Chitinase family protein (.1) Lus10032794
[exp]
14.0 0.8731
AT4G14480 Protein kinase superfamily pro... Lus10041162
[exp]
20.2 0.9101
Lus10004280
[exp]
22.5 0.9097
AT5G51890 Peroxidase superfamily protein... Lus10038054
[exp]
26.7 0.8938
AT3G07310 Protein of unknown function (D... Lus10002342
[exp]
32.7 0.9053
AT3G28210 SAP12, PMZ STRESS-ASSOCIATED PROTEIN 12, ... Lus10039448
[exp]
37.2 0.8752
Lus10019232
[exp]
37.9 0.9012
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Lus10013922
[exp]
41.0 0.8776
AT5G56110 MYB MS188, ATMYB80,... MALE STERILE 188, ARABIDOPSIS ... Lus10027110
[exp]
41.7 0.8957
AT3G12750 ZIP1 zinc transporter 1 precursor (... Lus10024107
[exp]
42.4 0.8576

Lus10034748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.