Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31360 822 / 0 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT1G10930 357 / 7e-109 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 338 / 6e-102 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT3G05740 297 / 2e-91 RECQI1 RECQ helicase l1 (.1) AT4G35740 285 / 8e-86 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G27880 170 / 8e-44 DEAD/DEAH box RNA helicase family protein (.1) AT5G27680 169 / 1e-43 RECQSIM RECQ helicase SIM (.1) AT5G08110 48 / 2e-05 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) AT5G26742 44 / 0.0005 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033289 [exp] 971 / 0 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10015467 [exp] 343 / 1e-102 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10042451 [exp] 312 / 8e-97 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10026219 [exp] 306 / 3e-94 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10041840 [exp] 254 / 1e-73 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10034434 [exp] 228 / 8e-64 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10028387 [exp] 202 / 2e-55 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10036983 [exp] 148 / 5e-37 AT1G27880 344 / 7e-106 DEAD/DEAH box RNA helicase family protein (.1) Lus10004503 [exp] 146 / 4e-36 AT5G27680 912 / 0.0 RECQ helicase SIM (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G104300 [exp] 881 / 0 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.003G015800 [exp] 343 / 7e-104 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.005G019800 [exp] 303 / 2e-93 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.005G107400 [exp] 279 / 2e-83 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G161200 [exp] 241 / 4e-68 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 175 / 2e-45 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 154 / 1e-38 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.005G000500 [exp] 47 / 7e-05 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 45 / 0.0002 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.012G063500 [exp] 44 / 0.0004 AT5G08110 1190 / 0.0 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10034749 pacid=23142189 polypeptide=Lus10034749 locus=Lus10034749.g ID=Lus10034749.BGIv1.0 annot-version=v1.0 ATGGTTTCGCCTTTTCGGTCAGATTCGCGGTTTTTCGAATTTCATTGGCAACAAACTGTCATAACTAATTGGACAAATCCGACCGTTAAAAGTTATTCTC ACATTTACAGGCTCACATTTACAGTTCACAGTAGCCCAGGTGTCCCTCAAGGAGTGCCCAATTTTCTTCCTGCTTTGAGCTTTCGCCCCTCTTATGCTTT ACCGCTTCGTCTGGAAATCGGGGGAAAATCTCGCAGAGCAATGGAAAATGAGGAATTGATATTGGAAGAGCTTCTCATCGTCGAAGCTGAAATTCTAGAC GTTCAAGCCCAGATAAAGGCGCTGTTTGACAAGCAAGAGAAGTTGGAGGAGAGGCAGTCCGACCTCAGAGCTTTGCTAGAAGCATGTCAAGCTTCCGGAA GCCCTGCTCATGGCGGCCAAGCGACGACTTCGGAAAATTGGTCCGGTTCATTTGAGTGGGATTCCCAGGCTGAAGATGTTAGGCTCAATGTTTTTGGGAT ATCTTCATACCGCGCGAATCAGCGTGAGATTGTAAATGCCGTGATGAGTGGAAAAGATGTTTTAGTGATCATGGCTGCTGGCGGCGGGAAAAGCCTTTGT TATCAGCTTCAAGCTATGCTTCGGAATGGGGTTGCCCTTGTTGTCAGTCCTTTACTTTCTTTAATTCAAGACCAGGTGATGGGACTGACTGCATTAGGGA TTCCTGCATTCATGTTGACATCAAGCACTAACAAGGAAGAAGAGAAGTTCATATATAAAGCTCTAGAAAAGGGTGAAGGAGAGCTCAAGATATTGTATGT TACTCCTGAAAACATATCGAAGAGTAAAAGATTTATGTCAAAGCTTGAAAAGTGTAATCATCAAGGTCGTCTCACTCTAGTTGCAATTGATGAGGCCCAT TGCTGTAGTCAGTGGGGACATGATTTCCGTCCTGACTACAAGAGCCTTGCAATCCTCAAGACTCAGTTTCCTAGTGTTCCTGTCGTGGCGTTGACTGCTA CGGCCACTCAGAAAGTCCAATATGATTTAATGGAGATGCTGCATATTCCAAAAAGTGTCAAGTTTGTTAGCACTGTCAACAGACCAAACCTTTTTTATAA GGTACGAGAGAAGTCCTCTGTTGCCAAAGAGGTTATTGATGAAATTGCTGAATTCATTCACGAGTCTTACTCAAACAATGAGTCTGGTATTGTCTATTGC TTCTCACGAAAGGAATCGAACAGGTGGAGCAAGAATAAGTTGCAGGTTATTGTTGGCACGGTAGCATTTGGTATGGGAATCAACAAACCTGATGTTAGGT TTGTTATACATCACAGCTTGAGCAAATCATTGGAGACATATTACCAGGAGAGTGGTAGAGCTGGACGAGATGGGCTACCTTCTGAATGTCTAATATTTTT CAGATCTGGTGATGTTCCAAGGCAGAGCTCGATGGTCTTCTACGAGAATTCTGGACTGCAGAATCTCTATGATATAGTACGATATTCCCAGTCGAAAAGG CAGTGTCGCCGAGCTGCATTCTTTCGACATTTTAGTGAGCCACTGCAGGACTGTAATGGGATGTGTGATAACTGTGCTTTTTTGAATGAGATTGATTATA GAAATTATGCAGTTGCTTTTGTCTCATTGCTGAAAAATGTGATGGAGAACGATCAAAGATTAACGACGCTACAATTACTAGACAAAATGAAACCCAGGCA TAAGGAACTAGGAAAGAAGGCTGTCAAGATGGAGACTTGTAGCAAACAGAAGATCAAGGCTGGAGATATAAGATCAGTGAAACACAGATTGTCTGGGTTA GGGTCCAAAATTGATGAGCTGCGGAAAGAGCTCTCTTTGAATCATGGTGGGAAATTCCCTCATTCTGTGTTGTCCAGTCAGCAGATGAGCATGATCAGCT CCCAAAAGCCCAACTCAATAGAAGAGTTGGAGAAGATAATTGGAAAACTGAAAGCTGATAAGTACGGGGACAGGATTCTGGAAGAGGTTAAGAATTATGG AGGTTCTGAAGATGAACCTGAAAGCTCAACGTTGAAGGATGAAGCAAGCGGTGATAAGAGGGCCAGTAAGAGACAGAAGACCAGAAAGAATGTGGTGGTC GTTGATAGCGATGAAGACGAGCCATGA
AA sequence Show only first row Show all	>Lus10034749 pacid=23142189 polypeptide=Lus10034749 locus=Lus10034749.g ID=Lus10034749.BGIv1.0 annot-version=v1.0 MVSPFRSDSRFFEFHWQQTVITNWTNPTVKSYSHIYRLTFTVHSSPGVPQGVPNFLPALSFRPSYALPLRLEIGGKSRRAMENEELILEELLIVEAEILD VQAQIKALFDKQEKLEERQSDLRALLEACQASGSPAHGGQATTSENWSGSFEWDSQAEDVRLNVFGISSYRANQREIVNAVMSGKDVLVIMAAGGGKSLC YQLQAMLRNGVALVVSPLLSLIQDQVMGLTALGIPAFMLTSSTNKEEEKFIYKALEKGEGELKILYVTPENISKSKRFMSKLEKCNHQGRLTLVAIDEAH CCSQWGHDFRPDYKSLAILKTQFPSVPVVALTATATQKVQYDLMEMLHIPKSVKFVSTVNRPNLFYKVREKSSVAKEVIDEIAEFIHESYSNNESGIVYC FSRKESNRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSLETYYQESGRAGRDGLPSECLIFFRSGDVPRQSSMVFYENSGLQNLYDIVRYSQSKR QCRRAAFFRHFSEPLQDCNGMCDNCAFLNEIDYRNYAVAFVSLLKNVMENDQRLTTLQLLDKMKPRHKELGKKAVKMETCSKQKIKAGDIRSVKHRLSGL GSKIDELRKELSLNHGGKFPHSVLSSQQMSMISSQKPNSIEELEKIIGKLKADKYGDRILEEVKNYGGSEDEPESSTLKDEASGDKRASKRQKTRKNVVV VDSDEDEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034749 [exp]	0	1
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10038380 [exp]	1.0	0.7668
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	1.7	0.7431
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012415 [exp]	4.9	0.7003
AT1G48170			unknown protein		Lus10022783 [exp]	7.2	0.7414
AT5G27260			unknown protein		Lus10035759 [exp]	11.0	0.7119
AT1G48170			unknown protein		Lus10022781 [exp]	14.1	0.7066
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	15.5	0.7070
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	18.7	0.7119
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10033967 [exp]	25.7	0.7335
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10038669 [exp]	25.8	0.6156

Compare expression of checked genes

Lus10034749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.