Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04770 898 / 0 ABCI8, ATNAP1, LAF6, ATABC1 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) AT5G44316 619 / 0 ABCI9 ATP-binding cassette I9, Stabilizer of iron transporter SufD superfamily protein (.1) AT1G32500 92 / 2e-19 ABCI7, ATNAP6 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025788 [exp] 1012 / 0 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10035874 [exp] 1008 / 0 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10010168 [exp] 71 / 7e-13 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Lus10017374 [exp] 71 / 8e-13 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G016900 [exp] 942 / 0 AT4G04770 924 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Potri.001G144500 [exp] 79 / 1e-15 AT1G32500 535 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Potri.003G089700 [exp] 73 / 1e-13 AT1G32500 544 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01458 [flax] [poplar] SUFBD SUF system FeS cluster assembly, SufBD
Representative CDS sequence Show only first row Show all	>Lus10034750 pacid=23142186 polypeptide=Lus10034750 locus=Lus10034750.g ID=Lus10034750.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCTCTTTTGACCAACGGTATCCCCTGCTTCTCTTCCCAGCCCATCTCCGATTCATCCAAGTTCTTCAAACCCTCAAGGCCTTCCAGGACAC TCAAAATCCGAGCAGATCTCACCGATTCAGGACCAGGTACTCTCTCTTCTTCAACTTCTACTCTCACCTCCTCCGATGACAAAATCAAGGAAATTCTTCG CAATCGCGATTACAAGGAGAAATTCGGCTTTACTGTCGATATCGACTCCTTTTCCATCCCCAAGGGTCTTTCCGAAGACACAATCAGGTCCATTTCCAAG TTGAAGCAGGAACCTGACTGGATGCTTGATTTCAGATTGAAATCTTTTCGCAAATTCTTGCTCATGAAAGAGCCTAACTGGTCTGACAATCGATACCCGC CCATTAACTTCCAAGACCTTTGCTATTATTCTGCACCTAAGAAGAAACCTACTTTGAATAGTCTTGATGAAGCTGACCCGGAGCTTCTCAAGTACTTCGA TAGACTGGGTGTGCCTCTCAATGAGCAGAATAGATTGGCTAATGTTGCTGTTGATGCTGTTCTTGATAGCGTCTCCATAGCTACAACCCATAGGAAGACT TTAGAGAAGTCTGGTGTTATCTTTTGTTCTATATCCGAAGCTGTGAACAAGTATCCTGATTTGGTGAAGAAGTATTTGGGGAAAGTTGTACCTATTGAGG ATAACTATTATGCAGCTCTTAATTCTGCAGTGTTCAGTGATGGTTCATTTCTCTATATACCCAAGGATACCAAATGCCCCATGCAGATTTCCACCTACTT TAGAATCAACGCCATGGAAACGGGCCAGTTCGAGAGGACTTTGATTGTTGCTGATGATCGGAGTTTCGTTGAGTACTTAGAAGGTTGTACTGCTCCTTCC TATGATACTAACCAGCTTCATGCAGCTGTTGTTGAGTTATACTGTGGTGAGAGTGCCGAGATTAAATACTCCACGGTGCAGAACTGGTATGCTGGCGATG AGGAAGGCAGAGGCGGCATTTATAATTTCGTTACCAAGCGCGGAGTTTGTGCTGGGGACCGATCTAAGATATCGTGGACTCAGGTGGAGACGGGCTCTGC AATTACTTGGAAGTACCCTAGTGTCGTCTTGGAAGGTGATGACACTGTAGGAGAGTTCTATTCAGTTGCTTTGACCAATAATTACCAACAGGCGGATACA GGAACGAAGATGATCCACAAGGGGAAAAATACAAAGAGTCGAATTATATCAAAGGGTATTTCGGTTGGCCATTCAAGAAACTGTTACAGGGGGCTTGTCC AGATTCAGTCAAAAGCAGAAAATGCCCGCAACTCATCTCAGTGCGACTCGATGCTTATTGGTGATACTGCAGCCGCCAATACCTATCCTTATATCCAGGT GAAGAATCCAACAGCAAGGGTAGAACATGAAGCGAGCACGTCAAAAATCGGGGAGGATCAGCTGTTCTACTTTCAGCAGAGGGGGGTAGACTACGAAAGA GCAATGGCTGCAATGATATCAGGGTTTTGTAGAGATGTGTTCAATGAGCTTCCAGATGAATTTGGGGCAGAGGTGAATCAGCTGATGAGCTTGAAGCTTG AAGGGTCGGTCGGATAA
AA sequence Show only first row Show all	>Lus10034750 pacid=23142186 polypeptide=Lus10034750 locus=Lus10034750.g ID=Lus10034750.BGIv1.0 annot-version=v1.0 MASSLLTNGIPCFSSQPISDSSKFFKPSRPSRTLKIRADLTDSGPGTLSSSTSTLTSSDDKIKEILRNRDYKEKFGFTVDIDSFSIPKGLSEDTIRSISK LKQEPDWMLDFRLKSFRKFLLMKEPNWSDNRYPPINFQDLCYYSAPKKKPTLNSLDEADPELLKYFDRLGVPLNEQNRLANVAVDAVLDSVSIATTHRKT LEKSGVIFCSISEAVNKYPDLVKKYLGKVVPIEDNYYAALNSAVFSDGSFLYIPKDTKCPMQISTYFRINAMETGQFERTLIVADDRSFVEYLEGCTAPS YDTNQLHAAVVELYCGESAEIKYSTVQNWYAGDEEGRGGIYNFVTKRGVCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADT GTKMIHKGKNTKSRIISKGISVGHSRNCYRGLVQIQSKAENARNSSQCDSMLIGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGVDYER AMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10034750 [exp]	0	1
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10025788 [exp]	1.4	0.8776
AT1G17080			Ribosomal protein L18ae family...		Lus10005580 [exp]	2.0	0.8850
AT5G17280			unknown protein		Lus10041805 [exp]	2.4	0.8529
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	2.8	0.8597
AT1G17080			Ribosomal protein L18ae family...		Lus10013712 [exp]	6.9	0.8699
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10022486 [exp]	11.8	0.8409
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10022592 [exp]	12.0	0.8256
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	12.4	0.8589
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	13.7	0.8468
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	14.8	0.8404

Compare expression of checked genes

Lus10034750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.