Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45620 556 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G38480 410 / 4e-138 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35140 408 / 4e-137 Transducin/WD40 repeat-like superfamily protein (.1) AT5G10940 157 / 2e-40 ASG2 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 69 / 3e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 61 / 8e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G43920 57 / 3e-08 transducin family protein / WD-40 repeat family protein (.1) AT5G64730 52 / 7e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G49430 52 / 1e-06 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT1G49040 52 / 2e-06 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033290 [exp] 946 / 0 AT3G45620 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10025088 [exp] 444 / 2e-151 AT4G35140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023993 [exp] 441 / 6e-150 AT4G35140 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040538 [exp] 89 / 6e-20 AT5G10940 291 / 7e-95 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 71 / 8e-13 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 70 / 1e-12 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 67 / 6e-12 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 65 / 3e-11 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10040537 [exp] 60 / 2e-10 AT5G10940 219 / 3e-68 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139000 [exp] 422 / 1e-142 AT4G35140 602 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G178700 [exp] 412 / 7e-139 AT4G35140 538 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G158300 [exp] 145 / 2e-36 AT5G10940 1080 / 0.0 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103132 [exp] 121 / 4e-31 AT5G10940 390 / 2e-132 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103066 [exp] 75 / 2e-15 AT5G10940 209 / 4e-64 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 69 / 3e-12 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G194100 [exp] 62 / 6e-10 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 59 / 4e-09 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 57 / 9e-09 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 55 / 1e-07 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10034751 pacid=23142292 polypeptide=Lus10034751 locus=Lus10034751.g ID=Lus10034751.BGIv1.0 annot-version=v1.0 ATGAATTCTTATAATGGATTACCTCATAGCCGACCTATACCGCCTCCCCTTCGCAAGCAAGAAAGGCTACAATTTCTTGGAACATATGGAAATGAAGAAA CAAGTTCATTTTCCGAAAAGCCAAGGTCGACCTCTACAAGATTAGGGCTGACATTGAATCCAACCTCAACGACTTGGGGAGCTGCTTCCCCCGGATCCCT CCCAATCCTACCTTCCCATCCCCATCGTATCAATCCCCCTTTGTCGAGTAGCCACCTCACGCTACTACACTGTGATGGTTCTTTCTCAAAGGCACCTCAG AAGGCAGCCTTCAAAGTCGTGGTTTTTCATGCCTCAGATGGTTCCCAGATGAACTCTGTTCCCATAAGCTATACTTGTGCCATGGAAATGGAGACGACTC CTCGAAAGAAAATCAAACTCGGATTGGGCGAGATCTTCAGACGAGAAGTGGGTTTGTCCTCCCCCAAATACTTCTTTCGCCGCTTATCTGGTTCTGAGGT CCTTGTGAAACAAATTGATCTTCACGGGAAGTTGGTTGGTCATGATGGATGTGTTAATGCTATTCAGTTCAACTCCACTGGGGATCTTCTCATATCTGGT TCCGATGACAGACAAGTCATATTCTGGGATTGGACAACCCAAAAGAAGAAGATGTCATATGATTCTGGTCACTCGGACAATATATTCCAGACTAAAATCA TGCCTCTCACTGATGATCAGACGATAGTTACTTCCTCTGCTGATGGACAGGTTCGGCTAGGCCAGGTAACAGGAGATGGCACTGTGGATACAAAGAGGCT GGGGAAACATGAAGGGCGTGCACATAACCTTGCTGTGGAGCCAGGAAGTCCTCACATACTTTATAGCTGCGGTGAAGATGGCGTTGTGCAACATTTTGAT CTCCGTAGTGCTTCTTGCACAAGGCTCTTTTGCTGCTCCCAGCTGAGAGAGACTGACAAACAGAATCTGAAGAAGATCAGGTTAAATGCAATTGTTATTG ATCCAAGGAAACCAAATTATTTCAGCATAGGAGGTTCTGATGAATATGCTCGTGTATATGATGTAAGAAAATGTCGATGGAATTCATCGAGCAATGGTGA CTCGCCTATTGATACCTTGTGTCCCAGTCACTTGATCAAGAACAACAGCGTGCATATTACTGCATTGGCTTACTCCAACTCAAGTGAACTTCTGGTCTCT TACAATGATGAACTTATTTATTTATTCCAAAAGAACATGGGGATGGGTCCAAATCCATCTGCTTTGTCAGCACAAGAGTTGGAGAAACTTGAAGGGCCAC AAGTCTACATGGGACACAGGAATTCACAGACAGTTAAAGGGGTCAGTTTCTTGGGCCTGAATGACGAGTATGTGGCAACGGGATCTGATTGTGGTCACAT ATTTATCTGGAAGAAGCAGGATTCAAGGCTTGTTCGAGTAATGTTTGGCGATCGCCACGTAGTTAACCAAATTGAGCCGCATCCTTGTATGCCTATGTTT GCAAGTTGTGGGATAGAGAAAACTGTTAAGCTCTGGGTTCCCAGCACATCTGGATCTCCTCCGTTACCAGAAAATATAGAAAAGATTATGGAGTCGAACA AGCAAGGTAGGGAAGACCATTCGCAGGTGTACCTGACTCCAGATGTGATAATGAGGATATTGAGGCTCCAGAGGAATGAAGCAGTGGCATATTTCGAGAG CAGGTTTGATTTAGAGGACAGTGATGGATATGCTGTAGGTTTCCCAGAGGCAGAAGCATCTTCTGCTGAAGATCCTAGGGAATGCAACATTAGTTGA
AA sequence Show only first row Show all	>Lus10034751 pacid=23142292 polypeptide=Lus10034751 locus=Lus10034751.g ID=Lus10034751.BGIv1.0 annot-version=v1.0 MNSYNGLPHSRPIPPPLRKQERLQFLGTYGNEETSSFSEKPRSTSTRLGLTLNPTSTTWGAASPGSLPILPSHPHRINPPLSSSHLTLLHCDGSFSKAPQ KAAFKVVVFHASDGSQMNSVPISYTCAMEMETTPRKKIKLGLGEIFRREVGLSSPKYFFRRLSGSEVLVKQIDLHGKLVGHDGCVNAIQFNSTGDLLISG SDDRQVIFWDWTTQKKKMSYDSGHSDNIFQTKIMPLTDDQTIVTSSADGQVRLGQVTGDGTVDTKRLGKHEGRAHNLAVEPGSPHILYSCGEDGVVQHFD LRSASCTRLFCCSQLRETDKQNLKKIRLNAIVIDPRKPNYFSIGGSDEYARVYDVRKCRWNSSSNGDSPIDTLCPSHLIKNNSVHITALAYSNSSELLVS YNDELIYLFQKNMGMGPNPSALSAQELEKLEGPQVYMGHRNSQTVKGVSFLGLNDEYVATGSDCGHIFIWKKQDSRLVRVMFGDRHVVNQIEPHPCMPMF ASCGIEKTVKLWVPSTSGSPPLPENIEKIMESNKQGREDHSQVYLTPDVIMRILRLQRNEAVAYFESRFDLEDSDGYAVGFPEAEASSAEDPRECNIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	0	1
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	2.0	0.8913
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	2.2	0.9056
AT1G55535			unknown protein		Lus10010333 [exp]	2.6	0.8666
AT5G61670			unknown protein		Lus10016713 [exp]	3.9	0.8825
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	5.0	0.8693
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10034213 [exp]	5.5	0.8640
AT1G64850			Calcium-binding EF hand family...		Lus10010653 [exp]	6.2	0.8524
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	6.6	0.8747
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10028605 [exp]	6.9	0.8451
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	7.3	0.8641

Compare expression of checked genes

Lus10034751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.