Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008302 [exp] 229 / 2e-78 ND / Lus10034740 [exp] 177 / 2e-57 ND / Lus10022965 [exp] 61 / 2e-11 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10033279 [exp] 53 / 1e-08 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10033281 [exp] 52 / 2e-08 AT1G71930 57 / 4e-09 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034752 pacid=23142227 polypeptide=Lus10034752 locus=Lus10034752.g ID=Lus10034752.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAACAACAAGTACCGCAACCGCCTCAACGTCTCTCGACGCCCCCTCTGGGTTACCACCCTTTCAACCCGTCTGAAGAGGAACTGTTAAGGT ACAGAAATCATCATAAAACCAGTGGCAAGAGAAAGTTTGATGCTGCTGCGGGTGGCTGTTCCCCACAGCCATCTTCAAAGGTTCCTAGACTCTGTGATGA TGGAGTTAGTCTTTCTTCTTCTTCTATGCCAACAACTCAGTCTCACAACTCCGAGAATCAAATACGTTGTTATATTGATCCTGATGTTTGGGCATTCCTT GAGGAAGTGAGAGAACTGAACAGCAAGTCCAGTCCCTCGTCGAAAATCTCAGTCTCTGTCCCATATCCCTTTCATCAGATTCTTCCTTCAACTCTAAGAA CCCTTAATCTCAAGTGTAATAGGTTGTTCAATATTGAAGTTGAATGTTACTTTGACATGATACCTGGAAAATGA
AA sequence Show only first row Show all	>Lus10034752 pacid=23142227 polypeptide=Lus10034752 locus=Lus10034752.g ID=Lus10034752.BGIv1.0 annot-version=v1.0 MEEEQQVPQPPQRLSTPPLGYHPFNPSEEELLRYRNHHKTSGKRKFDAAAGGCSPQPSSKVPRLCDDGVSLSSSSMPTTQSHNSENQIRCYIDPDVWAFL EEVRELNSKSSPSSKISVSVPYPFHQILPSTLRTLNLKCNRLFNIEVECYFDMIPGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034752 [exp]	0	1
					Lus10034740 [exp]	1.4	0.9484
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	2.8	0.9171
AT2G33490			hydroxyproline-rich glycoprote...		Lus10035172 [exp]	5.5	0.8734
					Lus10008302 [exp]	6.5	0.8906
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	7.3	0.8939
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	12.6	0.8913
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	13.0	0.8935
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	13.4	0.8821
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	14.0	0.8698
AT5G48290			Heavy metal transport/detoxifi...		Lus10016062 [exp]	14.3	0.8723

Compare expression of checked genes

Lus10034752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.