Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31420 854 / 0 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 835 / 0 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G62710 556 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G78530 308 / 6e-100 Protein kinase superfamily protein (.1) AT4G33430 315 / 2e-99 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G71830 312 / 3e-98 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT5G45780 310 / 2e-97 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 320 / 1e-96 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G62230 311 / 4e-95 ERL1 ERECTA-like 1 (.1.2) AT2G13790 303 / 9e-95 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033291 [exp] 928 / 0 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033104 [exp] 584 / 0 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 582 / 0 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034739 [exp] 481 / 4e-168 AT1G31420 406 / 3e-139 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10000629 [exp] 300 / 9e-94 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10015484 [exp] 301 / 1e-93 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019963 [exp] 301 / 4e-93 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016395 [exp] 308 / 1e-92 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10031108 [exp] 305 / 2e-92 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105000 [exp] 936 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G129000 [exp] 929 / 0 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G071100 [exp] 579 / 0 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G082400 [exp] 324 / 6e-103 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 324 / 9e-103 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.001G380800 [exp] 306 / 4e-99 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1) Potri.003G074000 [exp] 325 / 6e-99 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G117200 [exp] 310 / 3e-97 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.012G130400 [exp] 318 / 4e-97 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.017G108000 [exp] 304 / 4e-95 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034753 pacid=23142310 polypeptide=Lus10034753 locus=Lus10034753.g ID=Lus10034753.BGIv1.0 annot-version=v1.0 ATGGCCATCTGTCAGATGATATATCTAAGGGCTTGGCTTGTTTCTGCCCTTGTGCTTTACATGCTTTTAACGGAAGGAGGAGCTATCAGTCCTGATGGTG AGGCACTTTTAAGTTTCAAAAATTCTATTGTTCGTTCAGACGCAGTACTTCCCCGATGGAGGCCAGAGGATTCTGACCCATGTGGTTGGAATGGTGTGAC TTGTGATCAAATAACCAAGAGAGTGGTATATTTGAGTCTGAAGGACCGCAGGTTGAGTGGACCTATATCAGCTGACCTCGGGAAGCTAGAGCATTTAAAG ATTCTTGCTCTATATAACAATAACTTCTATGGAAATATACCTTCTGACTTGGGAAACTGCAGTGAGTTGCGGGGAATATACTTGCAAGGTAACTACTTGA GTGGAGTTGTTCCAGGTGAACTGGGAAACCTATCTGAACTTCAGTTTCTTGATATCTCAAGTAACTCACTCAGTGGATCTATTCCCCCATCGCTTGGGAA ACTAAGCAAACTTGTTAACTTCAATGTCTCCAACAACTTTCTCACTGGACCAATACCATCTGAGGGTTCACTCACCCAATTTCCAGACAGTTCGTTTGCT GGAAATAAGGACTTGTGTGGGAGGCAGATCAGTGTAGCTTGTAAAGATGATAGCAGGTCATCAAACAGTTCTTCTGGGTCTGAGTCAGCTCTAATTCAAG GAGGCAAGAAGAGATATCCTGCAAGGTTGATTGTCAGTGCTTTTGCAACCATTGGTGCTCTGCTTCTTGTGGCACTCATGTGCTTTTGGGGTTGTTTTCT ATACAAGAAGTTTGGTAGAAATGAAAGTAGCAGTGTTGCTATGGATGTTAGTGGAGGTGCATCAATTGTAATGTTTCATGGAGACTTGCCATACTCTTCC AAAGACATTATTAAGAAGCTGGAGACCTTGACGGAGGGGCATGTGATAGGTTGTGGGGGCTTTGGGACAGTGTACAAACTGGCAATGGATGATGGCAATG TGTTTGCTTTGAAGAGAATCCTCAAGATGAATGAAGGGTTTGATCGCTTCTTTGAGAGGGAGCTTGAAATTCTTGGGAGCATAAAACACAGATACCTAGT GAATTTGCGAGGATATTGTAATTCTCCAACATCTAAATTGTTGATCTATGACTATTTACCTGGTGGAAGTCTTGATGAAGTGCTCCATGAAAAATCTGAA CAACTTGACTGGGATGCACGCCTCAATATCATTGTCGGAGCTGCAAAAGGACTTGCATACCTGCATCATGATTGTTCCCCTAGAATCATACACCGTGATA TAAAATCAAGTAATATTCTACTTGATGGCAATTTAGCAGCTCGAGTGTCTGATTTCGGACTTGCTAAATTGCTAGAAGATGAAGAATCACACATCACAAC CATTGTTGCTGGAACTTTTGGTTACTTGGCCCCTGAGTACATGCAAAGTGGTAGAGCGACAGAAAAGACTGATGTATATAGCTTTGGCGTCCTGGTGCTT GAAGTAATAAGTGGAAAGCGACCAACAGATGCATCTTTCATTGAGAAGGGTCTCAATATTGTTGGTTGGTTAAATTATTTGGCATCTGAGAATAGGCAAA GGGAGATTGTCGATCCACAGTGTGAGGGTTTGCAAGCTGAATGTTTTGATGCCCTACTTTCAATTGCTATCCGATGTGTATCCTCAAATCCAGATGACCG GCCCACCATGCACAGAGTGGTTCAGTTGCTGGAATCAGAAGTGATGACCCCATGCCCAAGTGAATTCTATGACTCCAATTCCGAATAA
AA sequence Show only first row Show all	>Lus10034753 pacid=23142310 polypeptide=Lus10034753 locus=Lus10034753.g ID=Lus10034753.BGIv1.0 annot-version=v1.0 MAICQMIYLRAWLVSALVLYMLLTEGGAISPDGEALLSFKNSIVRSDAVLPRWRPEDSDPCGWNGVTCDQITKRVVYLSLKDRRLSGPISADLGKLEHLK ILALYNNNFYGNIPSDLGNCSELRGIYLQGNYLSGVVPGELGNLSELQFLDISSNSLSGSIPPSLGKLSKLVNFNVSNNFLTGPIPSEGSLTQFPDSSFA GNKDLCGRQISVACKDDSRSSNSSSGSESALIQGGKKRYPARLIVSAFATIGALLLVALMCFWGCFLYKKFGRNESSSVAMDVSGGASIVMFHGDLPYSS KDIIKKLETLTEGHVIGCGGFGTVYKLAMDDGNVFALKRILKMNEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEVLHEKSE QLDWDARLNIIVGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLAARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVL EVISGKRPTDASFIEKGLNIVGWLNYLASENRQREIVDPQCEGLQAECFDALLSIAIRCVSSNPDDRPTMHRVVQLLESEVMTPCPSEFYDSNSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	1.4	0.8640
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	2.0	0.8471
AT2G15730			P-loop containing nucleoside t...		Lus10012072 [exp]	3.0	0.8457
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10035469 [exp]	3.7	0.7964
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10019023 [exp]	4.0	0.8120
AT1G79720			Eukaryotic aspartyl protease f...		Lus10041621 [exp]	8.5	0.8115
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	9.2	0.8142
					Lus10010299 [exp]	9.5	0.8365
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	12.2	0.8382
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10028317 [exp]	14.2	0.7678

Compare expression of checked genes

Lus10034753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.