Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31410 183 / 2e-54 putrescine-binding periplasmic protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033291 [exp] 423 / 9e-142 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105100 [exp] 192 / 1e-57 AT1G31410 585 / 0.0 putrescine-binding periplasmic protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034754 pacid=23142228 polypeptide=Lus10034754 locus=Lus10034754.g ID=Lus10034754.BGIv1.0 annot-version=v1.0 ATGAAATCAATCTCCACAGTCTCACTCTGCACTTCGCCGCTGCCTCCTCAAATTGGAAACCCTAAAACCACAGTCTCCTCTTCCTCTTCCCGTCCCCATT TCCATTTCCTGCTCACCAATTCTCCCTCTCGCGTTTTATTCCTACCTTTCCTCCGCCACCGGAGAACAGTCCCGCTTGCCGTCTCCGATCGCCGGGGCGA AAATCCTCCTCCTGCATCTTCGTTTCCGACTGTCGCCGTATCGACTGCTTCTGTTGTTGCTGCAGCTGCTCTAATATTGCTCAGTTTCTCCGGAATTCCC GCATGTCCTGCTGCCGTCGCGCGGCCTCTCCCTGCTGTTTCTGTGCAAAATGATTCAGTTCATACGGATGCGACATCTGAGAATGTGGAGAGAGTTGACG CTGATGTGGAGCTTGAAGCTGCATTCAACGCTTGGAAATCGAAGACATTTGCTCTATCTGTTCCTCTACGCGTTGTTGCTCTCCGTGGCTCCGTTCCTCC TTCTTGGATCAAGGATTTCGTCCAGTCTCAGAGCAAGAGATTAAAGTTCAACACCAAGTTTGTCACAAGTCTGGAGGACATATTTTCTGATCTATCCTTA CCAATGAACAAACACAAAGTAGCTCCAGCTTCTACTGTGGCTGCTGATATAGTCAGTGTTGGTGACTCGTGGCTCAGTTATGCGATTAAAAGTTCTATGA TTGAGCCTATGAGAGGGGTGGAAGACCAGGATTGGTATAAAGGCTTAAATGAGAAATGGAAGGTAAGAATGTGA
AA sequence Show only first row Show all	>Lus10034754 pacid=23142228 polypeptide=Lus10034754 locus=Lus10034754.g ID=Lus10034754.BGIv1.0 annot-version=v1.0 MKSISTVSLCTSPLPPQIGNPKTTVSSSSSRPHFHFLLTNSPSRVLFLPFLRHRRTVPLAVSDRRGENPPPASSFPTVAVSTASVVAAAALILLSFSGIP ACPAAVARPLPAVSVQNDSVHTDATSENVERVDADVELEAAFNAWKSKTFALSVPLRVVALRGSVPPSWIKDFVQSQSKRLKFNTKFVTSLEDIFSDLSL PMNKHKVAPASTVAADIVSVGDSWLSYAIKSSMIEPMRGVEDQDWYKGLNEKWKVRM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31410			putrescine-binding periplasmic...		Lus10034754 [exp]	0	1
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10023122 [exp]	15.5	0.8056
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	19.8	0.7781
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10011484 [exp]	26.2	0.7959
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	36.9	0.7896
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10037288 [exp]	36.9	0.7443
AT5G24510			60S acidic ribosomal protein f...		Lus10034864 [exp]	43.3	0.7206
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10024866 [exp]	51.1	0.7669
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10001601 [exp]	56.2	0.7396
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10003872 [exp]	57.3	0.7633
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018729 [exp]	69.2	0.7669

Compare expression of checked genes

Lus10034754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.