Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31440 398 / 1e-135 SH3 domain-containing protein (.1) AT4G34660 285 / 1e-92 SH3 domain-containing protein (.1.2.3) AT4G18060 257 / 5e-82 SH3 domain-containing protein (.1) AT4G39020 72 / 1e-14 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033292 [exp] 763 / 0 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10028783 [exp] 278 / 8e-90 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017501 [exp] 274 / 3e-88 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10015253 [exp] 270 / 4e-87 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10017500 [exp] 264 / 3e-84 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028784 [exp] 258 / 9e-82 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10004584 [exp] 247 / 6e-78 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10011975 [exp] 240 / 2e-75 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10028785 [exp] 159 / 5e-46 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128800 [exp] 474 / 9e-167 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 458 / 3e-160 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3) Potri.004G161300 [exp] 288 / 8e-94 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.009G123200 [exp] 284 / 5e-92 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G354700 [exp] 251 / 1e-79 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 245 / 3e-77 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF07653 [flax] [poplar] SH3_2 Variant SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10034755 pacid=23142150 polypeptide=Lus10034755 locus=Lus10034755.g ID=Lus10034755.BGIv1.0 annot-version=v1.0 ATGGAAGCATTCAAAAAGCAAGCTGCTAAGCTTAGAGAGCAAGTTTCCAAGCAACAGCAGCCACACTTGGAGGGGCATCTCGTTCTAGTTTCCATGTGCA GTATAGGTGGATGGATGGATAGGAAAAGTAGAAACATTCAGGAAGTTAAAGGGGAACAGATTGGCATGACTTGTATATCTACCATATTGCAGGCAGTGAT GAAACATTTGGGGCATTTTGGCCATGACTCTGTTGTTCTCGATGAGGCCGAGCAGCAATGCTACAAACAGCTTCAAAATCTTTACAATTCTACAAGGGCA GCTAAGCATTTACAGAAGAACATAGTCCGTGGAGTTGAAGGCTACATATCTGTGGGTTTGAAGCAAATGGACATAGCAAGAAAGTTGGCCGCTGACTGTA GCAAATACGGAGGTGAAGGACAATGCACCAATCCTCATGTTTCCAAAGCTGTTAGCGAGTTTGGTAACTCACACACTTTAATGGAGGATGAAGCAGAAAC GTTGATTGGGGTCCTTAGTGGTCAGGTTTCTGAGCCGGTTCGGGCATTAATCACTGGGGCACCTTTGGAGGATGCCCGTCACTTGGTTCATCGGTATGAC AAGCTTCGCCAGGAGGTTGAGGCTCAGGCAGCTGACGTAATGAAGCGGCGCTCAAAGACGAAGGACTCTGATATAACTGCAGAGAATAGTATGAAGCTGA GGTCTGCTGAAAATAGGTTGACTGAGCTCAAATCTAGTATGGTGGCACTTGGAAGGGAAGCAACTGATGCCATGTTATCAGTTGAAAATCAACAACAAGA GATCACAACACAGCGGCTCTTTGCCATGATTATGAATATAATCAACTTTCATTATCTTGCGTGGCAATGGATCTACTATCCTGCTGCCTTGGCTGTGATT GTCGATGCAGAGAGATGCTATCATCGACATGTTCTTAATACATTAGAGAAGCTATATGCTGAGATGCTTTCGGAGGAGCAACGGTACGAGTCCAGATCAC AAACAACAACCATTGAGAAAGACATGAATGTCCCATCTCAACAAGAGAAAGACGCGAATGCCCTGCCTCGACAAGAGAAAGACGCGAATGCCCTGCCTCA GCAAGAGAGAGATACGAATGCCCCACCTCGACAGGAGTATACGATTACTAACGGAACAGATGATACTAGTCCAAAGGATGCACTTTTTATAGCAAAGGTT GTGCACCAATTTGATGCTCAAGCGGAAGGGGAGTTAAATCTATCCATTGATGATTATGTCATAGTTCGGCAGGTGGCCTCTACAGGGTGGTCGGAAGGAG AATGCAGAGGGAAAGCTGGATGGTTCCCTTCTGCATACGTCGAGAAAGATGAGAAAGCACCAACAAACTTGCTGTTGGAAAGAGGCTCACCAAAGTCTTG A
AA sequence Show only first row Show all	>Lus10034755 pacid=23142150 polypeptide=Lus10034755 locus=Lus10034755.g ID=Lus10034755.BGIv1.0 annot-version=v1.0 MEAFKKQAAKLREQVSKQQQPHLEGHLVLVSMCSIGGWMDRKSRNIQEVKGEQIGMTCISTILQAVMKHLGHFGHDSVVLDEAEQQCYKQLQNLYNSTRA AKHLQKNIVRGVEGYISVGLKQMDIARKLAADCSKYGGEGQCTNPHVSKAVSEFGNSHTLMEDEAETLIGVLSGQVSEPVRALITGAPLEDARHLVHRYD KLRQEVEAQAADVMKRRSKTKDSDITAENSMKLRSAENRLTELKSSMVALGREATDAMLSVENQQQEITTQRLFAMIMNIINFHYLAWQWIYYPAALAVI VDAERCYHRHVLNTLEKLYAEMLSEEQRYESRSQTTTIEKDMNVPSQQEKDANALPRQEKDANALPQQERDTNAPPRQEYTITNGTDDTSPKDALFIAKV VHQFDAQAEGELNLSIDDYVIVRQVASTGWSEGECRGKAGWFPSAYVEKDEKAPTNLLLERGSPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31440			SH3 domain-containing protein ...		Lus10034755 [exp]	0	1
AT3G07140			GPI transamidase component Gpi...		Lus10038183 [exp]	1.4	0.7171
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	6.0	0.6724
AT1G31440			SH3 domain-containing protein ...		Lus10033292 [exp]	9.8	0.7030
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	13.6	0.6807
AT2G23690			unknown protein		Lus10016785 [exp]	20.0	0.6606
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10015456 [exp]	23.2	0.7138
AT2G27410	B3		Domain of unknown function (DU...		Lus10015934 [exp]	25.5	0.5953
AT1G11570		NTL	NTF2-like (.1.2)		Lus10006762 [exp]	33.0	0.7022
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	35.5	0.6784
AT5G50180			Protein kinase superfamily pro...		Lus10032086 [exp]	38.7	0.6034

Compare expression of checked genes

Lus10034755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.