Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31460 97 / 4e-23 unknown protein AT1G23270 77 / 1e-16 unknown protein AT2G41342 52 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033293 [exp] 419 / 6e-149 AT1G31460 129 / 1e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128600 [exp] 114 / 1e-29 AT1G31460 90 / 2e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034756 pacid=23142238 polypeptide=Lus10034756 locus=Lus10034756.g ID=Lus10034756.BGIv1.0 annot-version=v1.0 ATGGCGGACTTCGGCTTTGGAAACCTCTCCGACACCGACGACTCCGCCGTCGACGAACTCATCTCCCAGACTAAGGACCTCTGTGTACTCGAACAAGTCT CCAAAATCAACTGCTCCAGCTTCAACGACTCTCTCCTCCCTTCCGACTTGGACACGCGCTTCCGTAAGCTCAAATCTCTCCCCGTCTCCCGAACCAGACC CCCCGCCGCTGCTGATTCTCCTACCAGGCCTAAATCTATGTCCAAATCGAAGAGCGATCTGCATCATCCTCGCTCTGCCCGCGGTGAAAAACTTGGAAGT GCGAAAACAGAGCAGGACAAAGTAAATGGTGAAGAGGATTTTCCGGACACTCCGAACGAGAAATCGAAGCGTGAGTACGTTTCCGATTCGTCTTCCGACT CAGATGTCATTTTTGCTGAAGAGAAGGTGGAGAGGAAAAGAAAGGAGAGTTCTTCCAATTTGATTCTGAAATCGAAATCAAAGCCGCAATTCGTCGTCAG TTCTCCTTTGGGGCTATCCAACTCCTCGAGGGATGAGTCGCCTTCTCCGCCTAGGAAACCGGGGTGCTTTTGGTGTTCGCCGAAGAAGACTGCCAGGAGG AGAAAGAGTAAAGAGAATTGGGAGCTTGATTGGGGAAGCAGCTATGGAGGGGACGACCTGTTGTCTGATCTCGGGACGTTTTCTGTGAAGGAGCAGCAGA GGATAATGAAGAAGGCCATGAAAGAAGAAGAGAGAGTAAACAGGGAGGCTGATAAGATTGTCAAATGGGCAAAACAGGCTTCCTCCAGGATGATGAGTTA CCATGGGAATGACGAAGAAGAGGATTTTGATGCCCTCAGTGATGATGATGATCATCGTTTGGCTGGAAAATAG
AA sequence Show only first row Show all	>Lus10034756 pacid=23142238 polypeptide=Lus10034756 locus=Lus10034756.g ID=Lus10034756.BGIv1.0 annot-version=v1.0 MADFGFGNLSDTDDSAVDELISQTKDLCVLEQVSKINCSSFNDSLLPSDLDTRFRKLKSLPVSRTRPPAAADSPTRPKSMSKSKSDLHHPRSARGEKLGS AKTEQDKVNGEEDFPDTPNEKSKREYVSDSSSDSDVIFAEEKVERKRKESSSNLILKSKSKPQFVVSSPLGLSNSSRDESPSPPRKPGCFWCSPKKTARR RKSKENWELDWGSSYGGDDLLSDLGTFSVKEQQRIMKKAMKEEERVNREADKIVKWAKQASSRMMSYHGNDEEEDFDALSDDDDHRLAGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31460			unknown protein		Lus10034756 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10037028 [exp]	6.6	0.8506
AT1G04030			unknown protein		Lus10003613 [exp]	13.6	0.8524
AT5G38300			unknown protein		Lus10017608 [exp]	35.7	0.7779
AT2G42110			unknown protein		Lus10016261 [exp]	36.3	0.8204
AT5G38300			unknown protein		Lus10033566 [exp]	48.8	0.7819
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10040117 [exp]	48.9	0.8096
AT2G05920			Subtilase family protein (.1)		Lus10034900 [exp]	51.0	0.7999
AT3G51670			SEC14 cytosolic factor family ...		Lus10001269 [exp]	56.5	0.7957
AT1G16520			unknown protein		Lus10031193 [exp]	57.4	0.7688
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10007331 [exp]	58.1	0.8033

Compare expression of checked genes

Lus10034756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.