Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61590 593 / 0 Protein kinase superfamily protein (.1) AT2G05940 451 / 9e-157 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G01020 427 / 9e-148 Protein kinase superfamily protein (.1) AT5G35580 426 / 2e-146 Protein kinase superfamily protein (.1) AT2G26290 417 / 1e-143 ARSK1 root-specific kinase 1 (.1) AT5G15080 393 / 2e-133 Protein kinase superfamily protein (.1) AT1G72540 387 / 2e-131 Protein kinase superfamily protein (.1) AT3G28690 385 / 3e-131 Protein kinase superfamily protein (.1.2.3) AT3G01300 385 / 2e-130 Protein kinase superfamily protein (.1) AT5G56460 379 / 2e-129 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033294 [exp] 736 / 0 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 449 / 8e-155 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 445 / 2e-153 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10036762 [exp] 423 / 2e-145 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10011930 [exp] 422 / 5e-145 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10027638 [exp] 422 / 5e-145 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 415 / 1e-142 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013148 [exp] 415 / 2e-142 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10006643 [exp] 389 / 2e-132 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128500 [exp] 644 / 0 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 643 / 0 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 457 / 5e-159 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 442 / 3e-153 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 435 / 1e-150 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 430 / 7e-149 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 417 / 3e-143 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 415 / 2e-142 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.003G222600 [exp] 392 / 8e-135 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 394 / 8e-134 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10034757 pacid=23142154 polypeptide=Lus10034757 locus=Lus10034757.g ID=Lus10034757.BGIv1.0 annot-version=v1.0 ATGAAGGAGAAGAACTCCTCCAATTCATCCTCCTCCTCAACAAACTCGAAGCCTCTGTGGCGGCCGTTAAGCGCCAAATCATGCTGCGCAGTGGACGAGG GAGACACGTTATTCTGCGGAAACTTCAGCCGGTGCCGTCCTTCCAAGTCGGAGTTCTCGAAGAACATAGCCCCTCTGCCGTCGTTCAGGAAGCTGTCGTT CTCGGACCTGAGCAGGTCGTCGTCGATGAGGATAGCGGAGGATCTGGCCCAGTCGTTTGGGCCGGATCTATACGATTTCCAGCTGATGGAGCTACGGGCC ATTACCCAGAACTTCTCGGCCCATTTCTTGCTGGGAGAAGGTGGGTTCGGGAGGGTCCATAAAGGGTATGTTGATGATAACTTGAGGGAAGGGCTCAAGG CCCAGCCTGTTGCGGTTAAGTTGCTCGACATCGAAGGTCTCCAAGGCCACCGAGAATGGCTGGCGGAAGTGATATTTCTGGGGCAGCTTAGGCACCCGAA TCTGGTGAAGTTGATTGGCTACTGTTGCGAGGAAGAAGACAGACTTCTGGTCTATGAGTTCATGCCCCGTGGCAGCTTGGAGAATCATTTGTTTAAAAGG CTATCGGTGACGTTGCCGTGGGGGACGAGGTTGAAGATCGCGATCGGGGCTGCTAAAGGACTGGCCTTCTTGCACGACGCCGACAAACCTGTGATCTATC GCGATTTCAAAACTTCCAATGTCCTTCTTCACTCCGATTTCATGGCTAAATTATCGGATTTCGGGCTAGCGACTATGGGACCGGAAGGGTCGAAATCCCA CGTAACAACCCGTGTGATGGGCACGTACGGGTACGCAGCGCCTGAGTACGTCGCCACGGGACACTTAACAACCAAGAGCGATGTCTACAGCTTTGGGGTC GTTTTGCTCGAACTTCTGACTGGGAGGCGGGCCATGGATAGGTCAAGGCCCAAGCACGAGCAGAACCTCATAGATTGGGCCAGACCGTACCTCACTAGCA GCAGGAGGCTCCGTTACATTATCGACCCAAGATTTGCTGGACAGTACTCAGTTAAAGGAGCCAAGCAACTGGCCCATCTAGCGACCCAATGTATCGGTTT GAACCCAAGGGATAGGCCCAAAATGCATGCCATCGTCGACAGCCTCCAAGCTCTTCTACACTATAATAGTGACATGGCTGTGAGCTGCGGCCAGTGGCCT CCGCCGTCGCTCAAGGCGTCTTCTAAATCCGGTGCTGCTCCGAACAACAAAGGTAGACGAGTGGTGGATGGTTCTAGGACTTCGAGTTATCGAAAATCGG CTCCGGCTGTGTCGACCAAGGTGTAA
AA sequence Show only first row Show all	>Lus10034757 pacid=23142154 polypeptide=Lus10034757 locus=Lus10034757.g ID=Lus10034757.BGIv1.0 annot-version=v1.0 MKEKNSSNSSSSSTNSKPLWRPLSAKSCCAVDEGDTLFCGNFSRCRPSKSEFSKNIAPLPSFRKLSFSDLSRSSSMRIAEDLAQSFGPDLYDFQLMELRA ITQNFSAHFLLGEGGFGRVHKGYVDDNLREGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEEEDRLLVYEFMPRGSLENHLFKR LSVTLPWGTRLKIAIGAAKGLAFLHDADKPVIYRDFKTSNVLLHSDFMAKLSDFGLATMGPEGSKSHVTTRVMGTYGYAAPEYVATGHLTTKSDVYSFGV VLLELLTGRRAMDRSRPKHEQNLIDWARPYLTSSRRLRYIIDPRFAGQYSVKGAKQLAHLATQCIGLNPRDRPKMHAIVDSLQALLHYNSDMAVSCGQWP PPSLKASSKSGAAPNNKGRRVVDGSRTSSYRKSAPAVSTKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	0	1
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	1.0	0.9917
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036536 [exp]	2.4	0.9755
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	2.4	0.9752
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10020977 [exp]	4.0	0.9653
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	5.3	0.9718
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	5.9	0.9687
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10036251 [exp]	7.5	0.9567
AT2G14830			Regulator of Vps4 activity in ...		Lus10033703 [exp]	8.3	0.9554
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	8.4	0.9670
AT1G14160			Uncharacterised protein family...		Lus10036770 [exp]	8.5	0.9613

Compare expression of checked genes

Lus10034757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.