Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11760 152 / 4e-48 MED32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033295 [exp] 260 / 8e-91 AT1G11760 162 / 4e-52 unknown protein Lus10030983 [exp] 248 / 7e-86 AT1G11760 161 / 3e-51 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152700 [exp] 169 / 6e-55 AT1G11760 174 / 9e-57 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034758 pacid=23142263 polypeptide=Lus10034758 locus=Lus10034758.g ID=Lus10034758.BGIv1.0 annot-version=v1.0 ATGGTTAATGTGATGGATGACATGGCAGATTCACTAAACAATGCCTATCAGGAATTCGTTGCTGCAGCTGCGAATGTGATCGAGACCAAAGAGTTGGACA GCGCTCAGAAAACAGTCGGTACCGATACTTTGTTGGAGAACTTTAAGCAGAAGTGGGAGTTGTTTAGGGTAGCATGTGATCAGGCCGAGGAGATTGTGGA GTCTGCGAAACAAAGGATAGAGTCTGAATGCTTGGTTGATGAAGCTACTGGAACCGGAACTGCAACTGTTAATCCGAAACCCGGACAGACAGCACAACCG AGTCTTGCTCCGATGAATGCAGTTCGGCTGGAGCAGATGAGTAAGGCTGTAAGGCGGCTTATGATCGAACTCCAACATGGGTCTGGAGCTGCTTCCGGTT CACCAGGGCATTCACATCCTTTCCCTCTTTTTAATGCCTAG
AA sequence Show only first row Show all	>Lus10034758 pacid=23142263 polypeptide=Lus10034758 locus=Lus10034758.g ID=Lus10034758.BGIv1.0 annot-version=v1.0 MVNVMDDMADSLNNAYQEFVAAAANVIETKELDSAQKTVGTDTLLENFKQKWELFRVACDQAEEIVESAKQRIESECLVDEATGTGTATVNPKPGQTAQP SLAPMNAVRLEQMSKAVRRLMIELQHGSGAASGSPGHSHPFPLFNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	0	1
AT2G42680		MBF1A, ATMBF1A	ARABIDOPSIS THALIANA MULTIPROT...		Lus10000056 [exp]	1.4	0.8966
AT1G11760		MED32	unknown protein		Lus10033295 [exp]	1.4	0.8790
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10006515 [exp]	1.7	0.8749
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012233 [exp]	3.5	0.8457
AT3G32930			unknown protein		Lus10039189 [exp]	4.5	0.8497
AT4G04614			unknown protein		Lus10006902 [exp]	4.7	0.8488
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	6.5	0.8578
AT5G54750			Transport protein particle (TR...		Lus10006060 [exp]	6.5	0.8418
AT5G64816			unknown protein		Lus10009081 [exp]	7.5	0.8654
AT2G33220			GRIM-19 protein (.1)		Lus10035237 [exp]	8.1	0.8125

Compare expression of checked genes

Lus10034758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.