Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19460 600 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G73160 431 / 3e-147 UDP-Glycosyltransferase superfamily protein (.1) AT5G59070 350 / 2e-115 UDP-Glycosyltransferase superfamily protein (.1) AT3G45100 51 / 1e-06 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033297 [exp] 822 / 0 AT4G19460 620 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014499 [exp] 468 / 2e-161 AT1G73160 616 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10032187 [exp] 460 / 1e-158 AT1G73160 615 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016475 [exp] 392 / 7e-132 AT5G59070 602 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10040757 [exp] 387 / 4e-127 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024892 [exp] 64 / 2e-10 AT3G45100 731 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022925 [exp] 56 / 2e-08 AT3G45100 536 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105500 [exp] 661 / 0 AT4G19460 664 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G128300 [exp] 658 / 0 AT4G19460 645 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097000 [exp] 451 / 6e-155 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G038400 [exp] 385 / 3e-129 AT5G59070 609 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G130000 [exp] 62 / 5e-10 AT3G45100 749 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10034760 pacid=23142176 polypeptide=Lus10034760 locus=Lus10034760.g ID=Lus10034760.BGIv1.0 annot-version=v1.0 ATGAACAGCAAGCAGCGTTGCATCTTTTTCAACCAGCTAGCTAGCAATAGTAGCAGAAACAGACCATTCATGGCATTCAACACCCACTTAACCACCAACA ACAACAAACCCAAGAAACCCCAACTCCTCCTCCTACCTAATTCCTCCTCCTCCTCCCATTCAAATCTCTGCGCTCTCTTCTTCTTCATAGCCCTTTTCAC CATCCCATCTCTCTTTGTCCTCCGCCGCACCCCTGCCCCCTCCTCCTCCTCCTCCCCCTCCTCTGCCATCCAGCCATGGTCAGGCGACCTGCGTGCTGCT GACTTCGCATGGAACCGTCTAGCTTTCAGTTCCGACGAAAACTCCGTAAAGCTCAAGATTGCTGTTTTCTCACGCAAATGGCCAATCGGCACTGTCCCTG GAGGCATGGAGCGTCACGCTTTCACCCTCCACTCTGCTTTAGCTCGCCGAGGACACAAAGTTCATGTCTTTACCTCTCCAATACACGACCAAGCCTTCCC TTCTTCCACAACCTCTTCTTATGGCGTGGTTATCCACTCACACGAAGGCGAATCGGCCGGGAAATTCAAGTACAGGAAGGCGTGGGAGCTATTTGAGAAG GAGAACAACCGATCATCCTTCGACGTCATCCACTCTGAGAGCGTGGCCCTGCCCTACTGGAAGGCTCGTAACGTTCCCAACCTCGTCGTCACCTGGCACG GCATCGCCTACGAGGCCCTGCAATCCACCATCTATCAGGATTTGACTCGGAAGCCGAAGGAGGCCATACTACCAGAATTCAACACGAGCATGTACGGACT CGTCCCCAAACTGATCAACGAGATTCGATTCTTCCACAACTATGCTCAACACATCGCCATCAGCAACAGCTGTGGCGAAATCCTCAGAGACGTGTACCAA ATTCCCGGAAGGAGAGTCCACGTCATCGTGAACGGAGTCGACGAGAACGAGTTCGGAGAGGATAAGAGATTGGGGAACGAATTCAGGTCCAAAATCGGAG TGCCTGCGAATGCAACCTTAGTGCTCGGCGTGGCAGGAAGATTGGTGAAAGATAAAGGACATCCGATACTCTACGAAGCAATATCCAAATTCATAACAAA TCACCCAAATGTCTACCTGGTTGTGGCAGGGTCTGGTCCTTGGGAGCGTAGATACAGAGAGCTCGGACCTCAGGTTCTGGTTGTGGGGTCCATGGCTCCG TCGGAACTGAAGGCGTTCTACAATTCGATCGATGTGTTTGTGAATCCGACGCTCAGGCCGCAGGGTTTGGATCTTACTTTGATGGAGGCGATGATGAGCG GTACTCCTGTAATGGCGTCGAGATTCGCGAGTATAAAGGGGACGATTATAGTTGATGATGAGTTCGGATTCATGTTCTCGCCGAATGTCGAGTCGTTGGT GGAGGCATTGGAGATAGCTGCCGAGGAAGGTGCAGAGAGGTTGGCGAAGAGAGGGGAGGCTTGTAGAGAGTATGCTGCTTCCATGTTCACTGCAACGAAC ATGGCTCTGGCTCATGAAAGGTTGTTTCTCTGTATGAAGAATCAAACATTTTGTGCCTACCCTTGA
AA sequence Show only first row Show all	>Lus10034760 pacid=23142176 polypeptide=Lus10034760 locus=Lus10034760.g ID=Lus10034760.BGIv1.0 annot-version=v1.0 MNSKQRCIFFNQLASNSSRNRPFMAFNTHLTTNNNKPKKPQLLLLPNSSSSSHSNLCALFFFIALFTIPSLFVLRRTPAPSSSSSPSSAIQPWSGDLRAA DFAWNRLAFSSDENSVKLKIAVFSRKWPIGTVPGGMERHAFTLHSALARRGHKVHVFTSPIHDQAFPSSTTSSYGVVIHSHEGESAGKFKYRKAWELFEK ENNRSSFDVIHSESVALPYWKARNVPNLVVTWHGIAYEALQSTIYQDLTRKPKEAILPEFNTSMYGLVPKLINEIRFFHNYAQHIAISNSCGEILRDVYQ IPGRRVHVIVNGVDENEFGEDKRLGNEFRSKIGVPANATLVLGVAGRLVKDKGHPILYEAISKFITNHPNVYLVVAGSGPWERRYRELGPQVLVVGSMAP SELKAFYNSIDVFVNPTLRPQGLDLTLMEAMMSGTPVMASRFASIKGTIIVDDEFGFMFSPNVESLVEALEIAAEEGAERLAKRGEACREYAASMFTATN MALAHERLFLCMKNQTFCAYP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	0	1
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	2.0	0.8907
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	2.8	0.9194
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	3.0	0.8653
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10009183 [exp]	6.0	0.8705
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	6.2	0.8733
AT5G57500			Galactosyltransferase family p...		Lus10019998 [exp]	11.3	0.8661
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	11.5	0.8729
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10041302 [exp]	18.0	0.7821
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	18.6	0.8539
AT5G46250			RNA-binding protein (.1.2.3)		Lus10038494 [exp]	20.0	0.8601

Compare expression of checked genes

Lus10034760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.