Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19410 441 / 6e-155 Pectinacetylesterase family protein (.1.2) AT5G45280 439 / 4e-154 Pectinacetylesterase family protein (.1.2) AT4G19420 406 / 3e-141 Pectinacetylesterase family protein (.1.2) AT2G46930 352 / 7e-120 Pectinacetylesterase family protein (.1) AT3G62060 348 / 5e-118 Pectinacetylesterase family protein (.1) AT1G57590 338 / 4e-114 Pectinacetylesterase family protein (.1) AT3G05910 336 / 3e-113 Pectinacetylesterase family protein (.1.2) AT5G26670 335 / 5e-113 Pectinacetylesterase family protein (.1.2) AT3G09410 312 / 5e-104 Pectinacetylesterase family protein (.1.3) AT5G23870 310 / 4e-103 Pectinacetylesterase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033301 [exp] 632 / 0 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 411 / 5e-143 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 409 / 6e-142 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 391 / 5e-135 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 382 / 1e-129 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10038024 [exp] 346 / 2e-117 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 346 / 3e-117 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10034766 [exp] 343 / 1e-116 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10007200 [exp] 332 / 2e-111 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233900 [exp] 515 / 0 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 499 / 9e-178 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G234100 [exp] 407 / 5e-141 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 348 / 2e-117 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.005G001500 [exp] 346 / 3e-117 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 338 / 5e-114 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 332 / 9e-112 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 327 / 1e-109 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.012G142300 [exp] 312 / 3e-104 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 300 / 9e-100 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10034762 pacid=23142289 polypeptide=Lus10034762 locus=Lus10034762.g ID=Lus10034762.BGIv1.0 annot-version=v1.0 ATGGGACGTTGGAGTTACTTGCCTCTTCTTCTTCTGTGCGCTTGTCTTGTAGCTACCGCTGGATTTCTCTTCACAACCGCTAATGCTGCAGGAGACATCC CCATCACCATTCTCCAAGCTGCTAAAGCCAGAGGAGCTGTGTGCTTAGATGGAAGCCCACCAGCTTACCATTTGGAGGAAGGCTCCGGTTCAGGAATCAA CAACTGGGTTGTCCATATTGAGGGAGGAGGATGGTGCGCCGACACAAAGAGCTGCGTGTCGAGGAGGGACACGTACAAAGGATCTTCCTCGAAGATGGAG AAGACCATGGGTTTCTCTGGGATTCTGGGTAGCAAAGATGCTTCCAATCCTGACTTTTACAACTGGAACAGAATCAAGATCAAGTACTGCGACGGCTCAT CTTTCACTGGTGACGTGGAGGCTGTTGATCCGAAAACGAACCTTTACTTCAGGGGAGAGAGGATCTGGCAGGCAGTTGTGGATGATCTGCTGGCCAAAGG GATGAAGAATGCCCAGAATGCTATACTATCGGGTTGCTCGGCAGGTGGATTGGCTGCCATATTGCACTGTGACAAATTCAGGGGACTGCTGCCGGCTTCT GCTCGAGTCAAATGTGTCTCTGATGCCGGTTTCTTCATTCACGGGAAGGATATAACAGGAGGGGTTGCAATTGAGAAATTCTTTGGCGGCGTTGTCAGCA CACACTGTTTCTTCCCACAGTATGTTGCGCAGACCATGGAGACACCTCTTTTCCTCATCAACTCCGCATACGATTCCTGGCAGATAAAGAATTATCTTCT TCTTAACCAACCTGTAGGTTTCAGGACGCAGTTCTTGACCGCAGTGAACACAGGACTGGGTAACTCGACAACTAGTTCAAGGGGTTTGTTCATTAACTCA TGCTACGCCCATTGCCAGTCAGGGTCGGCCCTAACTTGGGCTGGTAAAGGTCCGATCTTGGCCGACACGAGAATTGGGAAGGCAGTTGGAGACTGGTTCT GGGATAGGAACCGTTTCGAGAAAATCGATTGCCCGTACCCTTGCAACCCAACCTGCGTCAGCGTCGATTCTGATTCTTAG
AA sequence Show only first row Show all	>Lus10034762 pacid=23142289 polypeptide=Lus10034762 locus=Lus10034762.g ID=Lus10034762.BGIv1.0 annot-version=v1.0 MGRWSYLPLLLLCACLVATAGFLFTTANAAGDIPITILQAAKARGAVCLDGSPPAYHLEEGSGSGINNWVVHIEGGGWCADTKSCVSRRDTYKGSSSKME KTMGFSGILGSKDASNPDFYNWNRIKIKYCDGSSFTGDVEAVDPKTNLYFRGERIWQAVVDDLLAKGMKNAQNAILSGCSAGGLAAILHCDKFRGLLPAS ARVKCVSDAGFFIHGKDITGGVAIEKFFGGVVSTHCFFPQYVAQTMETPLFLINSAYDSWQIKNYLLLNQPVGFRTQFLTAVNTGLGNSTTSSRGLFINS CYAHCQSGSALTWAGKGPILADTRIGKAVGDWFWDRNRFEKIDCPYPCNPTCVSVDSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19410			Pectinacetylesterase family pr...		Lus10034762 [exp]	0	1
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10035475 [exp]	4.2	0.7916
					Lus10040408 [exp]	6.0	0.7582
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	6.2	0.7802
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	9.2	0.7695
AT5G65470			O-fucosyltransferase family pr...		Lus10012732 [exp]	9.5	0.7333
AT3G62930			Thioredoxin superfamily protei...		Lus10029441 [exp]	11.0	0.7411
AT2G19770		PRF5	profilin 5 (.1)		Lus10006846 [exp]	13.7	0.7266
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	15.9	0.7476
AT3G63380			ATPase E1-E2 type family prote...		Lus10004086 [exp]	17.4	0.7226
AT3G62930			Thioredoxin superfamily protei...		Lus10029440 [exp]	20.7	0.7032

Compare expression of checked genes

Lus10034762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.