Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48460 460 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G27360 238 / 4e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28580 236 / 4e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28600 230 / 4e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28650 226 / 1e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28590 226 / 3e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28640 225 / 5e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28660 222 / 4e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G31550 220 / 4e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28570 218 / 3e-67 SGNH hydrolase-type esterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033302 [exp] 698 / 0 AT3G48460 454 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 203 / 1e-61 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013938 [exp] 195 / 2e-58 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029638 [exp] 179 / 4e-52 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10020657 [exp] 179 / 7e-50 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029639 [exp] 170 / 5e-49 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10015476 [exp] 170 / 9e-48 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10012644 [exp] 163 / 1e-46 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10024085 [exp] 163 / 2e-46 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089700 [exp] 496 / 2e-176 AT3G48460 478 / 2e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G093400 [exp] 270 / 2e-89 AT3G48460 243 / 3e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 229 / 9e-72 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054300 [exp] 219 / 9e-68 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024300 [exp] 197 / 2e-59 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 190 / 8e-57 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 190 / 8e-57 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 190 / 8e-57 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 188 / 3e-56 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G006500 [exp] 180 / 4e-53 AT1G09390 506 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10034763 pacid=23142211 polypeptide=Lus10034763 locus=Lus10034763.g ID=Lus10034763.BGIv1.0 annot-version=v1.0 ATGACAACATTCCCACTTCCGCCACTCGCCGCCGCCGCCACCATCATCACTCTGCTCTTTACAACCGCCGCCGCCGCGACAGCGGCCAATAATAACCCTC AGTCGTTCAAGAAGATCTACGCCTTCGGAGACTCATTCACCGACACTGGCAACACGAGGTCGGCAGGACCCGGCGGAGGATTCGGCCACGTGTCGAACCC GCCGTACGGGGTCACCTTCTTCCACCGCCCGACCAACCGATACTCCGACGGCCGCCTTGTGATCGACTTCGTCACCCAATCCCTCAACCTCCCTTTCCTC CCTCCGTACAAGAGTCTGACAAATGGAAGCAGCGGCAATTCCGGCGTGAATTTTGCTGTCGGGGGCGCCACGGCGATAAACCACAGGTTCTTCGTAAGGA ATAACCTGTCGTTGGATGCTACGCCGCAGTCGATTCAGACGCAGATGATCTGGTTCGACCGGTTTTTGGAGAAGCGAGCCGGGTGTAATCGGAGTGCCAC GGTGGAGACGGAGCCCAAATGCAGGGCTGCTATGGAGGACGCTCTGTTTTGGGTCGGGGAGATTGGGGTTAATGACTACGCTTACATTCTTGGATCGGAA GTTTCCGGCGATACGATTCGGAAGCTTGGCATCAGTAGCGTTACCGGAGTCATTGAGGCACTACTAAAGAGAGGAGCAAAATACATGGTTGTACAAGGCC TACCACCATCGGGTTGCCTAACTTTAGCGCTGACCCTAGCACCCGAGGATGACAGAGACGAGCTCGGGTGTGTGAGGAGTGCCAACAACCAAACCAGCGT CCACAACTCGGTTTATCAAGCCAAGCTCCAAGAACTCCGGACCCGTTACCCGGACGCATCAATAGTGTACCTGGACTACTGGAACGCCTACAGGCAGATT GTGAAGAGCCCGGCTACATACGGGATGAAGGAGCCCTTCAAGGCCTGCTGTGGGTCGGGAGACGCGCCTTACAACTTCAACGTTTTCGCCACGTGCGGCA CTCCCGGTGCGGAGAAGCCCTGCCCTGACCCGGCCCAGTACATTAACTGGGACGGCGTGCATCTCACGGAAGGGATGTACAAGGTGCTCGCCGGCATGTT TGTTAACGGGAGTTTTAGTACTCCGCCGTTTGCGACGTTGTTTGGTCCACGGATGGGGTAG
AA sequence Show only first row Show all	>Lus10034763 pacid=23142211 polypeptide=Lus10034763 locus=Lus10034763.g ID=Lus10034763.BGIv1.0 annot-version=v1.0 MTTFPLPPLAAAATIITLLFTTAAAATAANNNPQSFKKIYAFGDSFTDTGNTRSAGPGGGFGHVSNPPYGVTFFHRPTNRYSDGRLVIDFVTQSLNLPFL PPYKSLTNGSSGNSGVNFAVGGATAINHRFFVRNNLSLDATPQSIQTQMIWFDRFLEKRAGCNRSATVETEPKCRAAMEDALFWVGEIGVNDYAYILGSE VSGDTIRKLGISSVTGVIEALLKRGAKYMVVQGLPPSGCLTLALTLAPEDDRDELGCVRSANNQTSVHNSVYQAKLQELRTRYPDASIVYLDYWNAYRQI VKSPATYGMKEPFKACCGSGDAPYNFNVFATCGTPGAEKPCPDPAQYINWDGVHLTEGMYKVLAGMFVNGSFSTPPFATLFGPRMG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	0	1
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	2.4	0.8352
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10043245 [exp]	4.0	0.8397
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	4.9	0.8490
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10027175 [exp]	6.0	0.8387
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	6.3	0.8380
AT1G09310			Protein of unknown function, D...		Lus10039866 [exp]	8.5	0.8385
AT4G28600		NPGR2	no pollen germination related ...		Lus10007743 [exp]	9.5	0.7985
AT1G55260			Bifunctional inhibitor/lipid-t...		Lus10042449 [exp]	9.9	0.8085
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004321 [exp]	13.1	0.8148
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	14.8	0.7573

Compare expression of checked genes

Lus10034763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.