Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51510 141 / 6e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033303 [exp] 280 / 9e-98 AT3G51510 159 / 6e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455900 [exp] 143 / 9e-44 AT3G51510 176 / 2e-56 unknown protein Potri.011G146200 [exp] 141 / 1e-43 AT3G51510 158 / 3e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034765 pacid=23142231 polypeptide=Lus10034765 locus=Lus10034765.g ID=Lus10034765.BGIv1.0 annot-version=v1.0 ATGGCTACACCCACCTGCAGCTTTTCCTCACCACCAATCCTCCACCCGAGAAAATCAGTGACGAGTCTCGTTGTTGTTACAACCAGCAGCATTTCTCAAC ACAAGTACTGTAGTTCCAACTACTGGATTCAAAACAAGAAACCAACAACAAGCTTTATGGTCCGCTCAAGTTCAGGCAAGAAACCCGACGAACCACCAAT TCCGTCATGGGCCGACCCGAATTCCGACGAACAGCCGCCGTGGGCACGGGGAGAATCCAGCAAACAAACTGACGGCGGGGAATTCCAGATCCCTTTCTAC GCTTACCTCCTTGCTTCCGCCATTACTGCAATTGCCGCCATTGGGTCGGTGTTTGAGTACGTAAACCAGAAGCCGATCTTCGGGGTGCTCTCAGTCGACA GCATTTTCTATGCTCCCATACTTGGATTCTTTGCTTTCACTGGCATCCCTACCTCTGCATTTCTGTGGTACAAATCTGTGGAAGCAGCAAACAAGGATGC AGAGGAACAAGACAGAAGAGATGGCTATATCAAATGA
AA sequence Show only first row Show all	>Lus10034765 pacid=23142231 polypeptide=Lus10034765 locus=Lus10034765.g ID=Lus10034765.BGIv1.0 annot-version=v1.0 MATPTCSFSSPPILHPRKSVTSLVVVTTSSISQHKYCSSNYWIQNKKPTTSFMVRSSSGKKPDEPPIPSWADPNSDEQPPWARGESSKQTDGGEFQIPFY AYLLASAITAIAAIGSVFEYVNQKPIFGVLSVDSIFYAPILGFFAFTGIPTSAFLWYKSVEAANKDAEEQDRRDGYIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51510			unknown protein		Lus10034765 [exp]	0	1
AT3G51510			unknown protein		Lus10033303 [exp]	1.0	0.9633
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	4.0	0.9232
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	4.2	0.9197
					Lus10040882 [exp]	5.7	0.9240
AT3G15110			unknown protein		Lus10009195 [exp]	7.1	0.9231
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10002222 [exp]	7.3	0.9118
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Lus10010280 [exp]	9.1	0.8565
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10016502 [exp]	9.9	0.9246
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	9.9	0.9144
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10038975 [exp]	10.2	0.8889

Compare expression of checked genes

Lus10034765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.