Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19420 508 / 0 Pectinacetylesterase family protein (.1.2) AT4G19410 428 / 1e-149 Pectinacetylesterase family protein (.1.2) AT5G45280 415 / 1e-144 Pectinacetylesterase family protein (.1.2) AT2G46930 372 / 2e-127 Pectinacetylesterase family protein (.1) AT3G62060 371 / 9e-127 Pectinacetylesterase family protein (.1) AT5G26670 368 / 1e-125 Pectinacetylesterase family protein (.1.2) AT1G57590 361 / 1e-122 Pectinacetylesterase family protein (.1) AT3G05910 359 / 3e-122 Pectinacetylesterase family protein (.1.2) AT5G23870 319 / 1e-106 Pectinacetylesterase family protein (.1.2.3) AT3G09410 317 / 1e-105 Pectinacetylesterase family protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034767 [exp] 645 / 0 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 641 / 0 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 578 / 0 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 565 / 0 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033304 [exp] 529 / 0 AT4G19420 392 / 2e-134 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 430 / 3e-150 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10038024 [exp] 371 / 9e-127 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 371 / 1e-126 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 366 / 1e-124 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234100 [exp] 536 / 0 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 439 / 9e-154 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 416 / 1e-144 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 377 / 4e-129 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 377 / 2e-128 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.005G001500 [exp] 375 / 3e-128 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 372 / 3e-127 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 341 / 6e-115 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.015G145400 [exp] 321 / 1e-107 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.012G142300 [exp] 319 / 9e-107 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10034766 pacid=23142232 polypeptide=Lus10034766 locus=Lus10034766.g ID=Lus10034766.BGIv1.0 annot-version=v1.0 ATGGCAGAAGAGTCCAGATTACTGCAATTAGGCAGATACTGGCATCTCTTTGCTTCTCTTGCTTTGGTGTGTATTAGCAGAACTGAGGGCCTTTATGTCC CAATTACATATGTGACGAGTGGCTTATCTAAAGGGGCTGTGTGCTTGGATGGAAGCCCACCAGCTTACAATTTTGATAAAGGATATGGCACAGGGATCAA TAGTTGGTTAGTCCAACTTGAGGGAATTATGAGTAATAGGCATGGTTTCAGTCCAGATTTCTACAACTGGAATAGAGTTAAGGTTAGATACTGCGACGGG TCTTCTTTCACTGGTGATGTGCAAGCCGTACATCCTGCTACTAACCTTCACTTCAGAGGAGCAAGGGTATGGCTTGCTGTAATGGAGGATCTTCTGGCCA AAGGGATGAAAAATGCTGAAAATGCTCTTCTCTCTGGATGCTCAGCTGGTGGATTGGCCTCTATTTTGCACTGTGACAGCTTCAAAGCTCTTCTACCAAT GGGAGCTAAAGTAAAGTGCCTTTCAGATGCTGGTTATTTTATCAATGTGAAGGATATTTCAGGAGCTTCCTACATTGAAACCTACTTCAACCAAGTGGTC ACTTTACATGGTTCTGTGAAGAATGTGCCACTGTCATGTAGGGGAAGATTGAATCCATCACTGTGCTTCTTCCCACGGAATTTAATCCAGGGAGTTCAAA CACCGGTTTTCCTTCTCAATGCTGCATACAATTCATGGCAGATAAAGAACATTCTGGCGCCAAGTGATGCCGATCCTCGTGGCTCCTGGAATACCTGCAA GATGGACATAAACAACTGCTCACCTCCTCAGATCAAAACAATGCAAGCATTCAGGCTGCAGTTCCTGAAAACACTGCCCAAGTCATCAAATTTTACAGCA AGAGGATTGTACATAAACTCCTGCTACGCCCATTGCCAAACAGAGTTTCAAGAAAGCTGGTACATGGCCGACTCTCCTGTTCTTGGTCGGACGAAAATAG CAAAGGCAGCGGGAGATTGGTTTTACGATAGGAAGTCATTCCAAGAGATTGATTGTCCTTACCCTTGCAATCCAACTTGCCGCGGTTCCGGTGGTGGTGG TGGTGGAGGAACTGTTTCAATAGATCAACCAAATTTATAG
AA sequence Show only first row Show all	>Lus10034766 pacid=23142232 polypeptide=Lus10034766 locus=Lus10034766.g ID=Lus10034766.BGIv1.0 annot-version=v1.0 MAEESRLLQLGRYWHLFASLALVCISRTEGLYVPITYVTSGLSKGAVCLDGSPPAYNFDKGYGTGINSWLVQLEGIMSNRHGFSPDFYNWNRVKVRYCDG SSFTGDVQAVHPATNLHFRGARVWLAVMEDLLAKGMKNAENALLSGCSAGGLASILHCDSFKALLPMGAKVKCLSDAGYFINVKDISGASYIETYFNQVV TLHGSVKNVPLSCRGRLNPSLCFFPRNLIQGVQTPVFLLNAAYNSWQIKNILAPSDADPRGSWNTCKMDINNCSPPQIKTMQAFRLQFLKTLPKSSNFTA RGLYINSCYAHCQTEFQESWYMADSPVLGRTKIAKAAGDWFYDRKSFQEIDCPYPCNPTCRGSGGGGGGGTVSIDQPNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	0	1
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	1.0	0.9125
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10033043 [exp]	3.5	0.8771
					Lus10011890 [exp]	3.7	0.8998
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10012603 [exp]	4.2	0.8689
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	5.2	0.8954
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011473 [exp]	5.3	0.8886
AT1G07080			Thioredoxin superfamily protei...		Lus10022669 [exp]	13.6	0.8779
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	14.8	0.8495
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	15.2	0.8262
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	15.2	0.8363

Compare expression of checked genes

Lus10034766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.