Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19420 576 / 0 Pectinacetylesterase family protein (.1.2) AT4G19410 494 / 3e-175 Pectinacetylesterase family protein (.1.2) AT5G45280 479 / 3e-169 Pectinacetylesterase family protein (.1.2) AT3G62060 440 / 2e-153 Pectinacetylesterase family protein (.1) AT2G46930 432 / 2e-150 Pectinacetylesterase family protein (.1) AT5G26670 429 / 2e-149 Pectinacetylesterase family protein (.1.2) AT3G05910 423 / 8e-147 Pectinacetylesterase family protein (.1.2) AT1G57590 418 / 3e-144 Pectinacetylesterase family protein (.1) AT5G23870 379 / 2e-129 Pectinacetylesterase family protein (.1.2.3) AT3G09410 374 / 2e-127 Pectinacetylesterase family protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033305 [exp] 809 / 0 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 646 / 0 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034766 [exp] 645 / 0 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 632 / 0 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033304 [exp] 568 / 0 AT4G19420 392 / 2e-134 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 496 / 7e-176 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10038024 [exp] 428 / 6e-149 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 429 / 8e-149 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 418 / 1e-144 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234100 [exp] 612 / 0 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 508 / 2e-180 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 492 / 4e-174 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 442 / 1e-153 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.013G000900 [exp] 441 / 1e-153 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 439 / 4e-153 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 432 / 6e-150 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 408 / 7e-141 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.012G142300 [exp] 380 / 4e-130 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 375 / 4e-128 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10034767 pacid=23142201 polypeptide=Lus10034767 locus=Lus10034767.g ID=Lus10034767.BGIv1.0 annot-version=v1.0 ATGGCAGAGTCCAGGTTACTGCTATCAGGCAAATGTTTGCATCTCATTGTATACCTTGTTTTGATGTGTGTGAGGAGAACCGAGAGCCTTTATGCTCCAA TTACATACGTGACGAGTGGTGTCTCAAAAGGAGCTGTGTGCTTGGATGGAAGCCCACCAGCTTACAACTTTGACAAAGGATATGGAACAGGGATCAATAG TTGGTTGGTGCAACTTGAGGGAGGAGGATGGTGTCACAACGTCACATCGTGTCTTGGTCGTAAGAATACACGCTTAGGGTCGTCGAAGAAAATGGGGGAC CAACTTGCTTTCTCAGGAATTATGAGCAACAGACGTGGGTTCAATCCAGATTTCTACAACTGGAACCGAGTGAAGGTTAGATACTGCGATGGATCTTCTT TCACCGGTGATGTGCAAGCAGTAGATCCTGCTACTAATCTTCACTTCAGAGGAGCAAGGGTATGGCTTGCTGTAATGGAGGATCTTCTGGCCAAAGGGAT GAAAAATGCTGAAAATGCTCTTCTCTCTGGATGCTCAGCTGGTGGATTGGCCTCTATTTTGCACTGTGACAGCTTCAGAGCTCTTCTACCAATGGGTGCT AAAGTGAAATGCCTCTCAGATGCTGGTTATTTCGTCAATGTGAAGGATATTTCAGGAGCTTCCTACATTCAAACCTATTTCAACCAAGTGGTCACATTAC ATGGTTCCGCGAAGAATTTGCCTCTCTCGTGTAGGAGAAGATTGAAACCATCATCACTGTGTTTCTTCCCACAGAATGTAATCCAGGAAGTTCGAACGCC GGTTTTCCTTCTGAATTCTGCATATGATTCATGGCAGATAAAGAACATCCTGGCGCCAAGTGATGCTGATCCTCGTGGCTCGTGGAATACCTGCAAGATG GACCTGAACCACTGTGCACCCCCCCAGATCCAAACAATGCAAGCATTCAGGAAGCAGTTCTTGAAAACACTGTCCACGTCATCAAATTCAACAGCCAGAG GGCTCTATGTAAACTCCTGCTTCGCACACTGCCAAACAGAGTCTCAGGCAAGCTGGTACATGACTGACTCTCCTGTTCTTGGTCAAACGAAAATAGCAAA GGCAGTGGGAGATTGGTTTTATGACAGGAAATCATTCCAAAAGATTGATTGTCCTTACCCTTGCAATCCAACCTGCCGAAGTTCTGGTGGTGGTGGCGGC GGTGGAGGAACTGTCTCAGAGGAACCAAATTTATAG
AA sequence Show only first row Show all	>Lus10034767 pacid=23142201 polypeptide=Lus10034767 locus=Lus10034767.g ID=Lus10034767.BGIv1.0 annot-version=v1.0 MAESRLLLSGKCLHLIVYLVLMCVRRTESLYAPITYVTSGVSKGAVCLDGSPPAYNFDKGYGTGINSWLVQLEGGGWCHNVTSCLGRKNTRLGSSKKMGD QLAFSGIMSNRRGFNPDFYNWNRVKVRYCDGSSFTGDVQAVDPATNLHFRGARVWLAVMEDLLAKGMKNAENALLSGCSAGGLASILHCDSFRALLPMGA KVKCLSDAGYFVNVKDISGASYIQTYFNQVVTLHGSAKNLPLSCRRRLKPSSLCFFPQNVIQEVRTPVFLLNSAYDSWQIKNILAPSDADPRGSWNTCKM DLNHCAPPQIQTMQAFRKQFLKTLSTSSNSTARGLYVNSCFAHCQTESQASWYMTDSPVLGQTKIAKAVGDWFYDRKSFQKIDCPYPCNPTCRSSGGGGG GGGTVSEEPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19420			Pectinacetylesterase family pr...		Lus10034767 [exp]	0	1
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10036756 [exp]	2.0	0.8571
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	4.9	0.7934
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	7.4	0.7865
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	8.7	0.8454
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	9.2	0.8141
AT4G23690			Disease resistance-responsive ...		Lus10017538 [exp]	10.6	0.8032
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	18.4	0.7391
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	20.5	0.7745
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10037556 [exp]	21.8	0.7879
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10038739 [exp]	22.4	0.7639

Compare expression of checked genes

Lus10034767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.