Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45340 721 / 0 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 721 / 0 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 548 / 0 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT3G19270 544 / 0 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT1G05160 267 / 4e-84 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 264 / 1e-82 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G05690 258 / 1e-80 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT2G42850 246 / 5e-76 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT1G19630 245 / 1e-75 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT5G38970 243 / 6e-75 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033308 [exp] 889 / 0 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 775 / 0 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10042652 [exp] 520 / 0 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 511 / 4e-180 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10016515 [exp] 503 / 5e-176 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10019858 [exp] 501 / 6e-175 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10037273 [exp] 488 / 5e-172 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10012675 [exp] 489 / 1e-170 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10040785 [exp] 411 / 3e-132 AT1G07510 1078 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235400 [exp] 740 / 0 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.001G242600 [exp] 553 / 0 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.009G033900 [exp] 553 / 0 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.004G140900 [exp] 550 / 0 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.014G029100 [exp] 548 / 0 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 535 / 0 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 530 / 0 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.008G067500 [exp] 271 / 1e-85 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 268 / 2e-84 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.014G179100 [exp] 260 / 2e-81 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10034768 pacid=23142300 polypeptide=Lus10034768 locus=Lus10034768.g ID=Lus10034768.BGIv1.0 annot-version=v1.0 ATGGACGCCTCCAATTACCAAATTACCCTCCCCCTTTTCCTCTTCTCAGCCGCCGTCTCTTCCTTCCTATTCCTCCTCAACCGTTTCTTGAACTCCCGCC GCCGGCACCAATTGCCTCTCCCTCCAGGAACCATGGGCTGGCCATACGTCGGCGAAACATTCCAGCTCTATTCCCAGGACCCAAACGTGTTCTTCGCCTG CAAGGTGAAGAAATTCGGCTCCATTCTCAAAACCCACATCTTGGGCTGTCCTTGCGTCATGGTTTCCAGCCCCGAAGCTGCGAAATTCGTGCTGGTCACT AAGTCTAATCTCTTCAAGCCCACTTTCCCCGCCAGTAAAGAAAGAATGCTCGGCCGTCAGGCCATTTTCTTCCACCAGGGTGATTATCACTCCAAGCTGA GAAAGCTCGTTCTCCGAGCTTTCCTTCCTCAGTCCATTCAGCACGCCGTTCCGCAAGTCGAATCCCTCGCTGTCCAAGCACTCCAATATTGGGAGTCCCT TCCCCAAATCAACACTTACCTCGAAATGAAATCGTATACGTTCAATGTGGCGCTTCTGTCCATATTCGGAAAGGACGCGACACTGTACAGGGAGGATTTG AAGAGGTGTTACTACATACTAGAGAAAGGGTACAATTCAATGCCGGTAAACCTTCCGGGGACTCTGTTCCACAAGGCTATGAAAGCGAGGAAGCAATTGG CTTTGATCTTGGCAAAGATCATGGCAAGAAGACGGGAACTGAAGATGGAGGAGGAGGACCACAACGATCTCCTGGGCTCTTTCATGGAGGATAAAGAAGG ACTCACCGACGAGCAAATCGCCGACAACGTCATCGGAGTGATCTTCGCCGCCAGGGACACCACCGCCAGTGCTCTCACATGGGTTCTCAAGTTTTTGGGA GATAACCCAACTGTTCTTCAGGCCGTCACCGAAGAGCAAGAAGAGATAGGTAGGGAAATGAGGAAGAGGGAGAAAGAAGTAATGAGCTGGGGAGATGCAA AGAAGATGCCGACAAGTTCAAGGGTGATTCAAGAAACACTGAGAGTCGCTTCCATTCTTTCCTTCACTTTCAGAGAAGCTGTCGAGGATGTTGAGTATGA AGGGTACATGATCCCAAAAGGATGGAAAGTATTACCACTTTTCAGGAACATTCACCACAGCGCAGATAACTTCTCTGATCCTGAGAAATTTGACCCTTCC AGATTTGAGGTGGCGCCGAGGGCCAATACGTTCTTGCCATTTGGGAGCGGGACCCACTCATGTCCTGGGAATGAGTTAGCAAAAGTGGAGATTCTGGTGC TGCTGCATCACCTGACCACTAAGTACAGGTGGTCTATGGTGGGTGACAGTAGTGGAATTCAGTATGGTCCTTTTGCCCTTCCCCAGAATGGTCTGCCCAT CAAGCTTTCCTTCAAGAAATAA
AA sequence Show only first row Show all	>Lus10034768 pacid=23142300 polypeptide=Lus10034768 locus=Lus10034768.g ID=Lus10034768.BGIv1.0 annot-version=v1.0 MDASNYQITLPLFLFSAAVSSFLFLLNRFLNSRRRHQLPLPPGTMGWPYVGETFQLYSQDPNVFFACKVKKFGSILKTHILGCPCVMVSSPEAAKFVLVT KSNLFKPTFPASKERMLGRQAIFFHQGDYHSKLRKLVLRAFLPQSIQHAVPQVESLAVQALQYWESLPQINTYLEMKSYTFNVALLSIFGKDATLYREDL KRCYYILEKGYNSMPVNLPGTLFHKAMKARKQLALILAKIMARRRELKMEEEDHNDLLGSFMEDKEGLTDEQIADNVIGVIFAARDTTASALTWVLKFLG DNPTVLQAVTEEQEEIGREMRKREKEVMSWGDAKKMPTSSRVIQETLRVASILSFTFREAVEDVEYEGYMIPKGWKVLPLFRNIHHSADNFSDPEKFDPS RFEVAPRANTFLPFGSGTHSCPGNELAKVEILVLLHHLTTKYRWSMVGDSSGIQYGPFALPQNGLPIKLSFKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	0	1
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	2.0	0.8805
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	4.6	0.8649
					Lus10015218 [exp]	6.0	0.8730
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002392 [exp]	8.4	0.7988
AT5G47920			unknown protein		Lus10002566 [exp]	8.8	0.7969
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002398 [exp]	9.9	0.8010
					Lus10026796 [exp]	10.1	0.8196
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	10.5	0.8222
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	12.5	0.8237
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10040691 [exp]	13.7	0.8146

Compare expression of checked genes

Lus10034768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.