Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19300 169 / 3e-47 Protein kinase superfamily protein (.1) AT5G54590 164 / 2e-46 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT5G15730 163 / 3e-46 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT1G49730 164 / 3e-45 Protein kinase superfamily protein (.1.2.3.4) AT4G20450 165 / 5e-45 Leucine-rich repeat protein kinase family protein (.1) AT1G33260 157 / 1e-44 Protein kinase superfamily protein (.1.2) AT4G01330 159 / 3e-44 Protein kinase superfamily protein (.1.2) AT4G02630 157 / 8e-44 Protein kinase superfamily protein (.1) AT1G01540 157 / 9e-44 Protein kinase superfamily protein (.1.2) AT1G79620 161 / 1e-43 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014071 [exp] 184 / 2e-52 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10008491 [exp] 170 / 6e-49 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 173 / 2e-48 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10008540 [exp] 165 / 4e-47 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 165 / 6e-47 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10032672 [exp] 162 / 8e-46 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10021003 [exp] 159 / 2e-44 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041796 [exp] 157 / 2e-44 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10016021 [exp] 157 / 3e-44 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235700 [exp] 365 / 2e-125 AT5G54590 161 / 2e-45 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 177 / 6e-50 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 174 / 6e-49 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.017G101400 [exp] 167 / 6e-48 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.019G094200 [exp] 167 / 3e-47 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.001G415300 [exp] 165 / 4e-47 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.004G113400 [exp] 163 / 8e-46 AT5G15730 535 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.019G094700 [exp] 167 / 1e-45 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 166 / 3e-45 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 165 / 6e-45 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034770 pacid=23142198 polypeptide=Lus10034770 locus=Lus10034770.g ID=Lus10034770.BGIv1.0 annot-version=v1.0 ATGATGGGGGCGATAGGGATGGTGGTGCTGATAACCATGATGCTCCGGTGGCTGGTGGGGGAGTACGTAGAGGATCAGTCCCTGAGGAGGGCACACCTGG CGGAGATGGAGAGGCAGCGGCGGTACCACAAGAAGAAGGTGATGATGAGGATGTGGAGCGGCAGCGGCGGGATACGGACCTACGCATTGGAAGAGCTGAA GGTGGCGACGCGGTATTTCTGGATTCGGATTGGTCTCGGAGGAGCTCCGTTTGTGTACTTGGCAGAGCTTGGGGATGGTAAGTTCGGTGCGGTGAAAAGG GTGATGGAGGACAGAGGTGGTAGCCGTAAGGTTTTCTTGGATGAGGTCTCTGTTTTGCTCAGGATCTCTCACCCTAACTTGGTCGCTTTGCTTGGTTTCT GCTTCGAGAAAGGTACGTTTTGCTTTACAGGTTCCAATATCATCACCACCACCAGTGGCAACCTCTTAACTTGGTCGAACCGCCTCAACATAGCCCTTGA TATCGCCAAGGCACTACACTACCTCCACTCCCAGGCCGACCCTCCCATCATCCACCGCGACATCAAGTCTTCCAATGTCCTCCTCCTCGACAACAACCAC GCCAAGCTCGCCGATTTTGGCCTATGCAAGCTCGGCCACGAGCCCCCACCCCCACCCCCACTACTCCTTAAGTCATCATCGCCACGCCCCCTCCCAGCCA TCAAAGGCTCCGTGGGGTACGTGGACACCAACTACCTCAGGACGGGGCTCGTCTCCCCCAAGAGCGATGTCTACAGCTTCGGGGTGCTCCTCCTCGAGCT CATCACGGGGCTCAAGGCCGTCCAGGGCTCTGTCACGCTCCCGGAGTGGACCGACGAGGCTAGGACGAAAGGTGGGGAGGATGGGGTCCGGAGGCTTCTA GACCCTAAGCTGGATGGGAATGTGGATTGGGATCAGCTTCAGACATTGGTCCACGTGGCGAACTTGGCCTTGTTGGATAATTACGAGGCGAGGCCCGAGA TGGGTGACATTGTTAACATGATACATAGTTGTATTCGACGTGAAGAGTCGTCCGTGGGCACCTCAAATGCCGTATAG
AA sequence Show only first row Show all	>Lus10034770 pacid=23142198 polypeptide=Lus10034770 locus=Lus10034770.g ID=Lus10034770.BGIv1.0 annot-version=v1.0 MMGAIGMVVLITMMLRWLVGEYVEDQSLRRAHLAEMERQRRYHKKKVMMRMWSGSGGIRTYALEELKVATRYFWIRIGLGGAPFVYLAELGDGKFGAVKR VMEDRGGSRKVFLDEVSVLLRISHPNLVALLGFCFEKGTFCFTGSNIITTTSGNLLTWSNRLNIALDIAKALHYLHSQADPPIIHRDIKSSNVLLLDNNH AKLADFGLCKLGHEPPPPPPLLLKSSSPRPLPAIKGSVGYVDTNYLRTGLVSPKSDVYSFGVLLLELITGLKAVQGSVTLPEWTDEARTKGGEDGVRRLL DPKLDGNVDWDQLQTLVHVANLALLDNYEARPEMGDIVNMIHSCIRREESSVGTSNAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19300			Protein kinase superfamily pro...		Lus10034770 [exp]	0	1
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10013014 [exp]	1.0	0.7965
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10010040 [exp]	1.4	0.7910
AT2G03630			unknown protein		Lus10026665 [exp]	5.5	0.7261
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10027947 [exp]	5.5	0.7589
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007283 [exp]	11.2	0.7295
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10037796 [exp]	14.8	0.6443
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	17.3	0.7001
AT1G54410			dehydrin family protein (.1)		Lus10020271 [exp]	17.7	0.6874
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Lus10002196 [exp]	22.9	0.6574
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10027300 [exp]	24.7	0.6793

Compare expression of checked genes

Lus10034770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.