Plant FIBer expression Database

Lus10034772 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037277
[exp]
44 / 3e-05 ND 40 / 1e-04
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10034772 pacid=23142225 polypeptide=Lus10034772 locus=Lus10034772.g ID=Lus10034772.BGIv1.0 annot-version=v1.0
ATGGGAGGTGGGAAGGACAAGCATAACGATGAGCAAGATAAGGGTTTGTTTGGGCATCTCGGAGGGCACGGAGCTCCACCTGGTGGATACTACCCTCAGC
AAGGAGGCTACCCTGGCGGTCCTCCTCCACCGCATGGCTATCCTCAGGCTCCCGGTGGTTACCCTCCGCAAGGCTACCCGCCTCAGCAAGGTTACCCTCC
GCAAGGGTATCCCCCTCAGCATGGGTACCCTCCTCAAGGGTACCCCCCTCAGCATGGGTACCCTCCTCAGCAGCACGGATATCCTTCTGGCCCCTCTCAC
CATACAGGACACGGTGGCATAGGGGCAGTGATTGCTGGCGGTGCAGCAGCTGCTGCAGCTGCAATGGGTGCTCACCATGTCAGCCACAGTGGTGGCTACG
GGCATAGTGGTGGGCATGGTGGTGCTCACTACGGAGGCATGGGCATGGGCATGGGTGGGTATGGACATGGACACGGACATGGTGGAAAGTTCAAGCAGGG
GAAGTTTAAGCATGGTGGCAAGTTCAAACACGGCAAGCATGGAAAGCATGGTGGAATGTTCGGAGGAGGCAAGTTCAAGAAGTGGAAATAA
AA sequence
>Lus10034772 pacid=23142225 polypeptide=Lus10034772 locus=Lus10034772.g ID=Lus10034772.BGIv1.0 annot-version=v1.0
MGGGKDKHNDEQDKGLFGHLGGHGAPPGGYYPQQGGYPGGPPPPHGYPQAPGGYPPQGYPPQQGYPPQGYPPQHGYPPQGYPPQHGYPPQQHGYPSGPSH
HTGHGGIGAVIAGGAAAAAAAMGAHHVSHSGGYGHSGGHGGAHYGGMGMGMGGYGHGHGHGGKFKQGKFKHGGKFKHGKHGKHGGMFGGGKFKKWK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10034772
[exp]
0 1
AT3G09770 LOG2 LOSS OF GDU 2, RING/U-box supe... Lus10015080
[exp]
4.5 0.8923
AT3G52430 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICI... Lus10039617
[exp]
4.6 0.8759
AT3G04350 Plant protein of unknown funct... Lus10027952
[exp]
7.5 0.8971
AT5G65500 U-box domain-containing protei... Lus10035947
[exp]
9.5 0.8805
AT1G13900 Purple acid phosphatases super... Lus10004661
[exp]
11.6 0.9049
Lus10033310
[exp]
12.4 0.8864
AT4G28500 NAC ANAC073, SND2, ... SECONDARY WALL-ASSOCIATED NAC ... Lus10015392
[exp]
12.7 0.9024
AT2G20780 AtPLT4 Major facilitator superfamily ... Lus10033702
[exp]
13.0 0.8901
AT4G27350 Protein of unknown function (D... Lus10038565
[exp]
13.6 0.9048
AT1G74740 CDPK1A, CPK30, ... CALCIUM-DEPENDENT PROTEIN KINA... Lus10042185
[exp]
14.1 0.8757

Lus10034772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.