Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19185 525 / 0 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G45370 516 / 0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G45870 500 / 7e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 244 / 2e-77 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 236 / 1e-74 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G53210 221 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 181 / 5e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G01070 175 / 5e-51 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G21890 172 / 8e-50 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 171 / 1e-49 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033316 [exp] 763 / 0 AT4G19185 520 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10035693 [exp] 595 / 0 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10037284 [exp] 557 / 0 AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10035694 [exp] 540 / 0 AT4G19185 465 / 4e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 245 / 7e-78 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 242 / 4e-76 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 231 / 1e-71 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10010647 [exp] 190 / 1e-56 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10007862 [exp] 183 / 5e-54 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G237100 [exp] 563 / 0 AT4G19185 476 / 4e-168 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 260 / 1e-83 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 237 / 5e-75 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.007G017800 [exp] 232 / 1e-72 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 227 / 1e-70 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G073200 [exp] 194 / 1e-58 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148400 [exp] 182 / 8e-54 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 177 / 2e-51 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 176 / 4e-51 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 171 / 2e-49 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10034776 pacid=23142298 polypeptide=Lus10034776 locus=Lus10034776.g ID=Lus10034776.BGIv1.0 annot-version=v1.0 ATGGCCGCTTCAGCCGTAGTCGTCGGAGCTCTTGACAAAGATGTCCGGAGAGCCCACATGTCGATGGCCCTTGTTCAGCTCATCAATGGAGGCTACCATG TCATCACCAAAGTGGCTCTCAATGTTGGCATCAATCAGCTCGTTTTCTGCCTCTTCCGCGATCTCCTTGCCCTCTCCATCCTCGCCCCCGTTGCCTATGT GCGGGAAAAGAGGATTCGACCGCCCATGACTAGGCGCTTGCTCATGGCTTTTTCCTTTCTTGGCTTATCAGGGATTTTTGGCAACCAGCTCTTGTTCCTT CTTGGTCTTAGCTACACGAATCCGACTTATGCTGCTGCAATACAGCCTTCCATTCCAGTTTTCACATTTGTCTTGGCTGTGATGATGGGTACAGAAAGAT TGAACTTGCTCAAAGCTGAAGGTCAAGCTAAGGTTTTAGGCACTGTCGTGTGTGTTTCTGGTGCCATATTCATGGTCCTTTTCCGCGGTCCAGCTGTCTT TGGACAGGCAGAAGCAGATTCTGGATCCAATGAAATAAGGGCTAGGGGTCAACCAGAACCTGTTGGATGGTTTCTGTCCAGCCTTCTGGACCTTGGTCTA GAGACCTGGCATCTTGGGGTTCTATGCTTAATTGGAAATTGTATATGCATGGCAGCTTTCCTAGCCATTCAGGCTCCAGTTTTAGCAAAATATCCTGCCA ACATTTCAGTCACTGCATATTCATATGGATTTGGAACTCTATTCATGGTGGTGACAGCATTCTTCATGACGGATGAATCCACGGACTGGAGCTTAACTCG GTCAGAGTTCTTGGCTGTTATATATGCTGGAACTGTTGCATCTGCTCTTAATTATGGACTTATAACATGGTGCAACAAGATCTTAGGACCGGCCATGGTC GCCCTCTACAATCCACTTCAACCTGCAGCATCTGCCTTTCTTTCGAGAATCTTCCTGGGAAGTCCTATTTATCTCGGAAGCATAATAGGGGGATGCCTAA TCATAGCAGGGCTGTATTTAGTGACATGGGGATCATACAAAGAGAGAGAAGCAGCATCAGCATCAGAAAGTCTGGTTCTTCCGCATTCGCCAGCCCGGCC ATCCGATCCTCTCATTCAGAAAGATGGGACCATAATCAAAGGTTTGTACCAGAGGGGACACCTCTTATCCGGGTCGTCGTTAAAACCGATAGATTGA
AA sequence Show only first row Show all	>Lus10034776 pacid=23142298 polypeptide=Lus10034776 locus=Lus10034776.g ID=Lus10034776.BGIv1.0 annot-version=v1.0 MAASAVVVGALDKDVRRAHMSMALVQLINGGYHVITKVALNVGINQLVFCLFRDLLALSILAPVAYVREKRIRPPMTRRLLMAFSFLGLSGIFGNQLLFL LGLSYTNPTYAAAIQPSIPVFTFVLAVMMGTERLNLLKAEGQAKVLGTVVCVSGAIFMVLFRGPAVFGQAEADSGSNEIRARGQPEPVGWFLSSLLDLGL ETWHLGVLCLIGNCICMAAFLAIQAPVLAKYPANISVTAYSYGFGTLFMVVTAFFMTDESTDWSLTRSEFLAVIYAGTVASALNYGLITWCNKILGPAMV ALYNPLQPAASAFLSRIFLGSPIYLGSIIGGCLIIAGLYLVTWGSYKEREAASASESLVLPHSPARPSDPLIQKDGTIIKGLYQRGHLLSGSSLKPID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10034776 [exp]	0	1
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	5.3	0.9028
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	6.5	0.9004
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	17.1	0.8903
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	18.1	0.8995
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	19.7	0.8827
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	20.5	0.8968
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	22.2	0.8789
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	23.3	0.8903
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10026004 [exp]	24.6	0.8863
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10020324 [exp]	24.7	0.8566

Compare expression of checked genes

Lus10034776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.