Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19180 778 / 0 GDA1/CD39 nucleoside phosphatase family protein (.1) AT2G02970 150 / 3e-38 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 142 / 9e-36 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 136 / 7e-34 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT1G14230 136 / 8e-34 GDA1/CD39 nucleoside phosphatase family protein (.1) AT5G18280 72 / 7e-13 ATAPY2 apyrase 2 (.1.2) AT3G04080 68 / 9e-12 ATAPY1 apyrase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033317 [exp] 1290 / 0 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 1096 / 0 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10035695 [exp] 769 / 0 AT4G19180 660 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10027686 [exp] 261 / 4e-78 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10039953 [exp] 252 / 2e-75 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 139 / 1e-34 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030470 [exp] 138 / 3e-34 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10006546 [exp] 83 / 3e-16 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10003270 [exp] 71 / 1e-12 AT5G18280 558 / 0.0 apyrase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236900 [exp] 955 / 0 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.015G079900 [exp] 313 / 1e-97 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.008G086400 [exp] 137 / 6e-34 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 132 / 4e-32 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 107 / 5e-24 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031200 [exp] 76 / 5e-14 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.013G053500 [exp] 71 / 1e-12 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031000 [exp] 66 / 4e-11 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.013G053700 [exp] 59 / 3e-09 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.004G195600 [exp] 58 / 1e-08 AT5G21140 325 / 2e-108 embryo defective 1379 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10034777 pacid=23142183 polypeptide=Lus10034777 locus=Lus10034777.g ID=Lus10034777.BGIv1.0 annot-version=v1.0 ATGGTTTTTGGTAGAATAGCGGCTGCGGTTTCTGCTGCGGCCACTCGCCTCTCGTTTTCGGGATCAAATTATGCTTCCATCTCGTATATGTCAACTGGGG TATCACCGCCTCCTACAGAACCCATCGATCATCGATTTTCTACCTCAAACCCTGCACAGAACAAGGCCAATTTGAGACTCTCTTCGTCACTGCAAGACTT GTCATCGTACAGGAGACTTGATCCAGAGGAAGCTGAGCCTCTCAAGTTTGGGGTTGATAAGAACATTCGTTTGCTACAGAGAGACAATGTTAATGCAAGC TTCTCAAAGGAGAAAGGACTACCAGCTGCGGCCCCTTACTCGTTAAGGAAATGGGTCCGGTCGTTGATGGTTCTACTGTGCCTGTTATTGCTTAGTTTAT TAGGTTATATGATTGCCATTTACATATATTCTTATTGGTCTCAAGGATTGTCCAAGTTCTATGTTGTTCTTGATTGTGGAAGTACTGGAACTCGCGTGTT CGTATACCGCACAGCTATTGATAACAAGAAAGAGGGTAACTTACCTATTGTGGTGAAATCATTTGCTGAAGGTGTTTCTCGAAAGCCAAGTGGGCGTGCT TATGACCGAATGGAGACGGAACCGGGGCTTCATATGTTGGTGCATAATACATCTGGCTTGAAATCTGCTCTAAATCCACTTCTTAAGTGGACTCAAAAGC AAATTCCAAAGGATGCACATAAGTCAACCTCACTTTTCCTTTACGCTACTGCTGGGGTACGCAGGCTCCCTACATCGGATTCAAAATGGCTGCTGGATAA GTCATGGTCTATACTAAAGGAATCTCCATTCTTGTGTCAAAGAGAATGGATTAAGATTATCAGTGGTATGGAAGAAGCTTATTTTGGATGGATAGCCTTA AATTATAGGACAGAGGTACTGGGAGCTAGTCCCAAGAAGCCAACATTCGGTGCTCTTGACCTAGGGGGTTCATCATTGCAGGTCACATTTGAGGGTAATA AACAGTCTCGTAATCAGACAAACTTAAAGCTTGGGATTGGAGCTGTTAATCATCATCTCAGTGCCTATTCTCTTTCAGGGTATGGTTTAAATGATGCATT TGACAAGTCTGTTGTTCATATCCTAAAGAGGATTCCACATGCTGATCTATATAGTAGGAAAGTAGAGATTAAGCACCCTTGTCTTCATTCTGGCTACAAG GAGGATTATCAATGTTCCCTCTGCAGTTCTTACAAGCAGGAAGGTGCCAGTCCTGTCATCAGAGGGAGACAACTTCGCAAGGCAGCTAAATCAGGAGTGG TTGTTCAGCTTATTGGTTCTCCAAAATGGGACGAATGCAGTGCTCTCGCTAAAATAGTTGTTAATTTGTCTGAATGGTCAGATAAAAGCCCAGTACTAGA CTGTGACCTGCAACCCTGTGCACTACCTGTAGGTCTGCCTCGTCCTTCAGGCCAGTTCTACGCGATGTCTGGGTTTTTTGTGGTGTATCGGTTTTTTAAC CTTTCTGCAGAAGCTTCCTTTGATGATGTATTGGAGAAAGGTAGAGAATTCTGTGAAAGGAATTGGAAAGCTGCAAAAGGCAGTGTTCCTCCACAGCCCT TTATTGAACAATACTGCTTCCGCGCACCTTACGTAGTGTCATTGTTGAGAGAGGGTTTGCACATCACAGATAACCAGATTGTTATTGGTTCGGGTAGTAT AACTTGGACGCTTGGGGTTGCACTATTGGAAGCTGGGAAAACATTTTCAACCAGATTAAGGCTTCATAAGTATGAAATATTCCATTTGAAGATACATCCA ACCGTTCTCATTGCAATTTTGCTCTTGTCAGTGGTCATGCTGCTTTTTGCATTATCATCTGCTGGCACCTGGATTCCAAGGTTTTTGCGGAGACCATATC TTCCGATGTTCAGGCATAATAGTGCATCCGCCACGTCTGTTCTCAACATCCCTTATCCCTTCCGTTTTCAACGTTGGAGTCCCATCAATACTGGAGATGG AAGGGTAAAGATGCCATTGAGTCCAACAGTGGGAGGTGGACAACAAAGACCATTTGGAATGGGAAATGGTGTGGGTGGAAATGGGATCGAGCTGATGGAG GCTGCAGCATTCAGCAGTGTTTCACATAGTTATTCGTCAAACAGTTTAGGGCAGATGGTTGAGAGTAGTGGTAGCATGATGTCCTTCTGGTCCCCTCACA GAAGTCAGATGCGTCTACAGAGCCGGAGATCGCAATCCAGAGAAGACCTCACGTCATCCTTGACAGATACTCATCTGGTGAAGGTTTAG
AA sequence Show only first row Show all	>Lus10034777 pacid=23142183 polypeptide=Lus10034777 locus=Lus10034777.g ID=Lus10034777.BGIv1.0 annot-version=v1.0 MVFGRIAAAVSAAATRLSFSGSNYASISYMSTGVSPPPTEPIDHRFSTSNPAQNKANLRLSSSLQDLSSYRRLDPEEAEPLKFGVDKNIRLLQRDNVNAS FSKEKGLPAAAPYSLRKWVRSLMVLLCLLLLSLLGYMIAIYIYSYWSQGLSKFYVVLDCGSTGTRVFVYRTAIDNKKEGNLPIVVKSFAEGVSRKPSGRA YDRMETEPGLHMLVHNTSGLKSALNPLLKWTQKQIPKDAHKSTSLFLYATAGVRRLPTSDSKWLLDKSWSILKESPFLCQREWIKIISGMEEAYFGWIAL NYRTEVLGASPKKPTFGALDLGGSSLQVTFEGNKQSRNQTNLKLGIGAVNHHLSAYSLSGYGLNDAFDKSVVHILKRIPHADLYSRKVEIKHPCLHSGYK EDYQCSLCSSYKQEGASPVIRGRQLRKAAKSGVVVQLIGSPKWDECSALAKIVVNLSEWSDKSPVLDCDLQPCALPVGLPRPSGQFYAMSGFFVVYRFFN LSAEASFDDVLEKGREFCERNWKAAKGSVPPQPFIEQYCFRAPYVVSLLREGLHITDNQIVIGSGSITWTLGVALLEAGKTFSTRLRLHKYEIFHLKIHP TVLIAILLLSVVMLLFALSSAGTWIPRFLRRPYLPMFRHNSASATSVLNIPYPFRFQRWSPINTGDGRVKMPLSPTVGGGQQRPFGMGNGVGGNGIELME AAAFSSVSHSYSSNSLGQMVESSGSMMSFWSPHRSQMRLQSRRSQSREDLTSSLTDTHLVKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10034777 [exp]	0	1
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016663 [exp]	1.7	0.9230
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	5.3	0.9099
AT3G60400			Mitochondrial transcription te...		Lus10013142 [exp]	8.8	0.8667
AT5G65950			unknown protein		Lus10037422 [exp]	9.2	0.9037
AT1G79090			unknown protein		Lus10031788 [exp]	9.5	0.8800
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014618 [exp]	10.6	0.8646
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10040047 [exp]	12.4	0.8346
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	13.4	0.9032
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10038353 [exp]	14.0	0.8972
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	14.3	0.8807

Compare expression of checked genes

Lus10034777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.