Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06040 471 / 5e-156 unknown protein AT5G21900 242 / 3e-71 RNI-like superfamily protein (.1) AT1G21410 89 / 7e-19 SKP2A F-box/RNI-like superfamily protein (.1) AT5G23340 82 / 2e-16 RNI-like superfamily protein (.1) AT1G77000 78 / 3e-15 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G25350 76 / 5e-14 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 76 / 5e-14 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT3G58530 72 / 4e-13 RNI-like superfamily protein (.1) AT4G15475 66 / 9e-11 F-box/RNI-like superfamily protein (.1) AT3G07550 61 / 1e-09 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033320 [exp] 1286 / 0 AT2G06040 517 / 7e-174 unknown protein Lus10017169 [exp] 722 / 0 AT2G06040 436 / 4e-143 unknown protein Lus10021558 [exp] 166 / 1e-44 AT2G06005 428 / 3e-149 FRIGIDA interacting protein 1 (.1.2) Lus10040998 [exp] 86 / 2e-17 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 86 / 5e-17 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10013444 [exp] 84 / 9e-17 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10002014 [exp] 78 / 1e-14 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 78 / 1e-14 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10028645 [exp] 76 / 2e-14 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142200 [exp] 585 / 0 AT2G06040 544 / 0.0 unknown protein Potri.006G220600 [exp] 395 / 1e-127 AT2G06040 427 / 1e-139 unknown protein Potri.006G254100 [exp] 85 / 7e-17 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.002G074700 [exp] 81 / 7e-16 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.018G027700 [exp] 81 / 1e-15 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G185700 [exp] 77 / 8e-15 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.006G195800 [exp] 72 / 4e-13 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.018G130800 [exp] 73 / 5e-13 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 72 / 6e-13 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.007G075600 [exp] 69 / 2e-12 AT5G23340 291 / 5e-97 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034779 pacid=23142182 polypeptide=Lus10034779 locus=Lus10034779.g ID=Lus10034779.BGIv1.0 annot-version=v1.0 ATGGTTCTGCTTCGTTCTCGGGAGGTCACTCCCAAAATCCTAGCGAAAGACTCCGACACTACCTCCAATGACCGTGAACCCTCCGACGGTCAAACTGTTC CACCTGCCTCTCTTCCGCCTCAAACTCCCCCATCTCTCTCTCCTCCCACCACCACGCCCAGACGGAGCTTCCGTCTCGCTTCCAGATCACCGCCTGCACA TGAAGCGCCTCAGACTTCCGGCCGCAAGAGGAAGGCTACTGAAATTAAAGCTGAAAAGGAGGAGTCTCCCACGTTGGAGGGCACCAGTGGTAACCAAGGT CTCGTGATTGCTGATACGACAACTAAACAGGAAGATGAAGGGAAAAGTGGCGGGAAAGACGAGGCGATTCCCCGTAGTGATAAGTGCACTAGAAGATTTA GTAGTGAAGAGAAAGGGAAGGGGAAAATTGGGGAAGCGGTGGTTTCAGATCACAATGCTTTGAGAAACGGGGCTATACGGCCTCCAGGAAGCCTGGTAAT TGACGAGGACAAGGCAGGTGGTGAAGGCAGACGACGAAACCCTGATCAGGAGAGACTGACGCTGGAAGAAGGTCATGAACTGGAATCTAAAGTCAAATTC TTCGTTGACTCAATCAGAAACCAATTTCCGGAGGAAAATGTTAAACGGCCTACGGATGGTGGTTTGACGAATAAGATATCTGGTTCACGAATGAACCAGT TCAAGGAAGCCGCGCGGAAGAATGCGGCTCGATTTGCTCATGTTGTGGCTGAAGAAGAGCATCTACAAGATGACGCCACTACTGGCGTTGAAATTGATGA CCCATCTACTGAGGGAGAAGACAAGATTGAAGATTGGCCAGGTCCTTTCTCGACTGCCATGAAAATTATTCGGGGTAGATCAAATAGGATCAACTTGCAA AGCTGGAAGCCTGCTTCTGACAAGTCAAAGTCTGTTGGAATAAATTGGACTCCCAGAGAAAATGGTGGCTCTAATTGCTCGAAACCATTGGTTCCGCCTT CGTTGCAGCAACTCTGCATCGAAGGTCTTGCCAAAAATGCCGATGCAATCACTTCACTCGAACATGTTCCTGATGTTTACAGGCATAGGCTTTCCCAGTT GCTCTGCGATTCTCAAAAGATGAATACACGATTTCTGCAGCTTCTCGTTAGTGGATCTCCTTCTGAAATACGAATCAGGGATTGTTCCTGGCTATCAGAG GAAGACTTCAAAGATTGTATTGAGGGGCTTGACACCAGCAATTTAGAGTCTGTTTATACTCTTTGCTTTTTGAGACAAGAACAACTTATATATGTGTATT GCATGAACTTGCCTGTACTAACTACTGTATCCCTGAGTGGTGCTTATCGGCTTTCAGATGTTGGACTGAGATCAATTGTCTCTGCTGCTCCTGCACTACA ATGCCGTAATCTTAGCCAGTGTTCTCTAATTGCTGCAACTAGTATCAGCATTTTGGCAGACTCGGTGGGATCTACTTTGAAAGAACTATATATTAATGAC TGCCAAAATATTGTCGCTATGGATATGTTACCTTCTTTGACGAGGCTTCAACAGCTGAAAGTACTGTCATTGGGTGGTATTGAAACCGTTAGTGATGACT TCATTATGTCTTATTGTGCTGAACGTGGAGATGCTATGAAGGAGCTTATTCTTTCCGACTGCGTGAAATTGACTGATACTTCCTTGAAAGCCATAGCTAC TGCATGTCCTCCACTGCAGTCTCTCAACCTTGCAAATTTGCGGAAGTTGACTGACTCAGCATTAGGATATCTTGCAAATGGCTGCAGGAATATTCAAACT TTAAAGCTGTGTCGCAACAATTTCAGTGATGAAGCAATTGCAGCATTCATAGAAGCTTCCGGGGAGACGTTGAAAGATCTTTCACTTAATAATGTCAAAC AGGTTAGTCACAACACTGCAGTGGCTGTAGCTAGACGTGCAAGAGATTTGCAGAGTTTGGATATTTCATGGTGCCGGAACTTGGAGGACGAGGCGGTTGG GATGATTGTGGATAGCTGTTTGTCATTGCAGGTGCTCAAAATTTTTGGGTGTGATCAGCTGACAGATGTGCTCATAGGCGGCCACTCGAATTCAGTAGTG GAAATCATTGGGAAGAAGATGAGCCCAGCTTTAACAAATGTCAGAAAGGGTGATGTTGCACCATCATTCCCAGCGCACTATACATCAGTGCTATCCTCCA TGTAA
AA sequence Show only first row Show all	>Lus10034779 pacid=23142182 polypeptide=Lus10034779 locus=Lus10034779.g ID=Lus10034779.BGIv1.0 annot-version=v1.0 MVLLRSREVTPKILAKDSDTTSNDREPSDGQTVPPASLPPQTPPSLSPPTTTPRRSFRLASRSPPAHEAPQTSGRKRKATEIKAEKEESPTLEGTSGNQG LVIADTTTKQEDEGKSGGKDEAIPRSDKCTRRFSSEEKGKGKIGEAVVSDHNALRNGAIRPPGSLVIDEDKAGGEGRRRNPDQERLTLEEGHELESKVKF FVDSIRNQFPEENVKRPTDGGLTNKISGSRMNQFKEAARKNAARFAHVVAEEEHLQDDATTGVEIDDPSTEGEDKIEDWPGPFSTAMKIIRGRSNRINLQ SWKPASDKSKSVGINWTPRENGGSNCSKPLVPPSLQQLCIEGLAKNADAITSLEHVPDVYRHRLSQLLCDSQKMNTRFLQLLVSGSPSEIRIRDCSWLSE EDFKDCIEGLDTSNLESVYTLCFLRQEQLIYVYCMNLPVLTTVSLSGAYRLSDVGLRSIVSAAPALQCRNLSQCSLIAATSISILADSVGSTLKELYIND CQNIVAMDMLPSLTRLQQLKVLSLGGIETVSDDFIMSYCAERGDAMKELILSDCVKLTDTSLKAIATACPPLQSLNLANLRKLTDSALGYLANGCRNIQT LKLCRNNFSDEAIAAFIEASGETLKDLSLNNVKQVSHNTAVAVARRARDLQSLDISWCRNLEDEAVGMIVDSCLSLQVLKIFGCDQLTDVLIGGHSNSVV EIIGKKMSPALTNVRKGDVAPSFPAHYTSVLSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06040			unknown protein		Lus10034779 [exp]	0	1
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10004024 [exp]	8.5	0.7107
AT3G07565			Protein of unknown function (D...		Lus10025582 [exp]	11.2	0.6812
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042665 [exp]	16.1	0.6672
AT2G06040			unknown protein		Lus10033320 [exp]	24.1	0.6893
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004398 [exp]	31.0	0.6514
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	33.2	0.6879
AT5G30495			Fcf2 pre-rRNA processing prote...		Lus10035425 [exp]	34.0	0.5888
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10040775 [exp]	40.0	0.6499
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10039205 [exp]	42.0	0.6719
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	51.3	0.6277

Compare expression of checked genes

Lus10034779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.